Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_F_P21
(886 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_12284| Best HMM Match : ATP-synt_ab (HMM E-Value=0) 283 2e-76
SB_7724| Best HMM Match : ATP-synt_ab_C (HMM E-Value=0) 197 9e-51
SB_20291| Best HMM Match : ATP-synt_ab (HMM E-Value=0) 74 1e-13
SB_55653| Best HMM Match : No HMM Matches (HMM E-Value=.) 71 2e-12
SB_21210| Best HMM Match : No HMM Matches (HMM E-Value=.) 58 1e-08
SB_49893| Best HMM Match : ATP-synt_ab (HMM E-Value=0) 36 0.044
SB_8215| Best HMM Match : FeoB_N (HMM E-Value=4) 33 0.31
SB_47596| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.6
SB_58083| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.2
SB_44024| Best HMM Match : Flavin_Reduct (HMM E-Value=0.79) 30 2.2
SB_53344| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.9
SB_46099| Best HMM Match : 7tm_1 (HMM E-Value=4.7e-23) 29 5.0
SB_12626| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.6
SB_6555| Best HMM Match : zf-RanBP (HMM E-Value=0.3) 29 6.6
SB_46345| Best HMM Match : AAA_5 (HMM E-Value=0.053) 28 8.7
SB_28616| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.7
>SB_12284| Best HMM Match : ATP-synt_ab (HMM E-Value=0)
Length = 238
Score = 283 bits (693), Expect = 2e-76
Identities = 148/223 (66%), Positives = 164/223 (73%), Gaps = 25/223 (11%)
Frame = +1
Query: 211 ILVTGIKVVDLLAPYAXXXXXXXXXXXXXXXTVLIMELINNVAKAHGGYSVFAGVGERTR 390
+L TGIKV+DL+ PYA TVLI ELINN+AK HGG SVFAGVGERTR
Sbjct: 2 VLFTGIKVIDLIEPYAKGGKIGLFGGAGVGKTVLIQELINNIAKGHGGLSVFAGVGERTR 61
Query: 391 EGNDLYHEMIESGVISLKD---------------------KTSKVALVYGQMNEPPGARA 507
EGNDL EM+ESG+I D K SK V+GQMNEPPGARA
Sbjct: 62 EGNDLLREMLESGIIKYGDDFMHSMEEGGWDLSKVDKAGMKESKATFVFGQMNEPPGARA 121
Query: 508 RVALTGLTVAEYFRD----QEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLA 675
RVAL+GLT+AEYFRD +G+DVL F+DNIFRFTQAGSEVSALLGR+PSAVGYQPTLA
Sbjct: 122 RVALSGLTIAEYFRDGAGEAQGKDVLFFVDNIFRFTQAGSEVSALLGRMPSAVGYQPTLA 181
Query: 676 TDMGTMQERITTTKKGSITSVQAIYVPADDLTDPAPATTFGSL 804
T+MG MQERIT+TKKGSITSVQA+YVPADDLTDPAPATTF L
Sbjct: 182 TEMGAMQERITSTKKGSITSVQAVYVPADDLTDPAPATTFAHL 224
>SB_7724| Best HMM Match : ATP-synt_ab_C (HMM E-Value=0)
Length = 448
Score = 197 bits (481), Expect = 9e-51
Identities = 107/181 (59%), Positives = 120/181 (66%), Gaps = 3/181 (1%)
Frame = +1
Query: 1 AMDGTEGLVRGQPVLDSGSPIRIPVGAETLGRIINVIGEPIDERGPIPTDKTAAIHAEAP 180
AMDGTEGL+RGQ +D+G PI IPVG ETLGRIINVIGEPIDERGP+ TDK AAIHAEAP
Sbjct: 125 AMDGTEGLIRGQKCVDTGGPITIPVGPETLGRIINVIGEPIDERGPVETDKRAAIHAEAP 184
Query: 181 EFVDMSVQQEILVTGIKVVDLLAPYAXXXXXXXXXXXXXXXTVLIMELINNVAKAHGGYS 360
EFV+MS +QEIL TGIKVVDLLAPYA TVLIMELINNVAKAHGGYS
Sbjct: 185 EFVEMSTEQEILETGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYS 244
Query: 361 VFAGVGERTREGNDLYHEMIESGVISLKDKTSKVALVY---GQMNEPPGARARVALTGLT 531
VFAGVG + D+ M E + K + V +Y + +P A L T
Sbjct: 245 VFAGVGYQPTLATDM-GTMQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATT 303
Query: 532 V 534
V
Sbjct: 304 V 304
Score = 104 bits (249), Expect = 1e-22
Identities = 49/53 (92%), Positives = 50/53 (94%)
Frame = +1
Query: 646 SAVGYQPTLATDMGTMQERITTTKKGSITSVQAIYVPADDLTDPAPATTFGSL 804
+ VGYQPTLATDMGTMQERITTTKKGSITSVQAIYVPADDLTDPAPATTF L
Sbjct: 247 AGVGYQPTLATDMGTMQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHL 299
Score = 35.9 bits (79), Expect = 0.044
Identities = 16/19 (84%), Positives = 17/19 (89%)
Frame = +2
Query: 806 DATTVLSKAIAELGIYPXV 862
DATTVLS+ IAELGIYP V
Sbjct: 300 DATTVLSRGIAELGIYPAV 318
>SB_20291| Best HMM Match : ATP-synt_ab (HMM E-Value=0)
Length = 475
Score = 74.1 bits (174), Expect = 1e-13
Identities = 56/203 (27%), Positives = 89/203 (43%), Gaps = 10/203 (4%)
Frame = +1
Query: 214 LVTGIKVVDLLAPYAXXXXXXXXXXXXXXXTVLIMELINNVAKAHGGYSVFAGVGERTRE 393
L+TG +V+D L P TV+ L ++ ++ G GER E
Sbjct: 85 LLTGQRVLDALFPCVQGGTTAIPGAFGCGKTVISQSLSKF---SNSDVIIYVGCGERGNE 141
Query: 394 GNDLYHEMIESGVI---SLKDKTSKVALVYGQMNEPPGARARVALTGLTVAEYFRDQEGQ 564
+++ + E V ++ + ALV N P AR TG+T++EYFRD G
Sbjct: 142 MSEVLRDFPELTVEINGQVESIMKRTALVANTSNMPVAAREASIYTGITLSEYFRDM-GH 200
Query: 565 DVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERI-------TTTKKG 723
V + D+ R+ +A E+S L +P+ GY L + + ER ++G
Sbjct: 201 HVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGRVSCLGNPQREG 260
Query: 724 SITSVQAIYVPADDLTDPAPATT 792
S+T V A+ P D +DP + T
Sbjct: 261 SVTIVGAVSPPGGDFSDPVTSAT 283
>SB_55653| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 390
Score = 70.5 bits (165), Expect = 2e-12
Identities = 64/281 (22%), Positives = 119/281 (42%), Gaps = 23/281 (8%)
Frame = +1
Query: 10 GTEGLVR-GQPVLDSGSPIRIPVGAETLGRIINVIGEPIDERGPIPTDKTAAIHAEAPEF 186
G + L++ G V +G+ + +PVG E LGR+++ +G PID +GP + A + +AP
Sbjct: 16 GNDRLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNPIDGKGPTGGTR-ARVGVKAPGI 74
Query: 187 VDMSVQQEILVTGIKVVDLLAPYAXXXXXXXXXXXXXXXTVLIMELINNVAKAHGG---- 354
+ + +E ++TGIK VD L P T + ++ I N + + G
Sbjct: 75 IPRTSVKEPMLTGIKAVDSLVPIGRGQRELIIGDRQTGKTAIAIDTIINQKRFNDGVDEI 134
Query: 355 --------------YSVFAGVGERTREGNDLYHEMIESGVISLKDKTSKVALVYGQMNEP 492
Y ++ +G++ L +M ++ D +V ++
Sbjct: 135 DILNTRGLFLEKKLYCIYVAIGQKRSTVAQLVKKMTDA------DAMKYTIIVSATASDA 188
Query: 493 PGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTL 672
+ +G + E+FRD G+ L+ D++ + A ++S LL R P Y +
Sbjct: 189 APLQYLAPYSGCAMGEFFRD-NGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDV 247
Query: 673 ATDMGTMQERIT----TTKKGSITSVQAIYVPADDLTDPAP 783
+ ER + GS+T++ I A D++ P
Sbjct: 248 FYLHSRLLERAAKMNDSNGGGSLTALPVIETQAGDVSAYIP 288
>SB_21210| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 428
Score = 57.6 bits (133), Expect = 1e-08
Identities = 41/146 (28%), Positives = 64/146 (43%), Gaps = 2/146 (1%)
Frame = +1
Query: 361 VFAGVGERTREGNDLYHEMIESGVISLKDKTSKVALVYGQMNEPPGARARVALTGLTVAE 540
VFA +G + E+G + V L N+P R LT AE
Sbjct: 148 VFAAMGVNMETARFFKQDFEENGSME------NVCLFLNLANDPTIERIITPRLALTTAE 201
Query: 541 YFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERI--TTT 714
+ Q + VL+ + ++ + +A EVSA +P G+ + TD+ T+ ER
Sbjct: 202 FLAYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTDLATVYERAGRVEG 261
Query: 715 KKGSITSVQAIYVPADDLTDPAPATT 792
+ GSIT + + +P DD+T P P T
Sbjct: 262 RNGSITQIPILTMPNDDITHPIPDLT 287
>SB_49893| Best HMM Match : ATP-synt_ab (HMM E-Value=0)
Length = 313
Score = 35.9 bits (79), Expect = 0.044
Identities = 18/46 (39%), Positives = 27/46 (58%)
Frame = +1
Query: 523 GLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGY 660
G T+ EYFRD+ G+D L+ D++ + A ++S LL R P Y
Sbjct: 42 GCTMGEYFRDR-GEDALIVYDDLSKQAVAYRQISLLLRRPPGREAY 86
>SB_8215| Best HMM Match : FeoB_N (HMM E-Value=4)
Length = 231
Score = 33.1 bits (72), Expect = 0.31
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Frame = -2
Query: 240 IDDFYTSYENLLLHRHVDKLWSFG-MDSSSLVGWDGTALVNRFAD--YIDDASEGFSSH 73
+DD Y Y + L+ +VD L+ G +D + G+ V+ + D Y+D +GF SH
Sbjct: 168 VDDLYNGYVDDLIDGYVDDLYVDGYVDDLYVDGYVDDLYVDGYVDDLYVDGYVDGFQSH 226
>SB_47596| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 657
Score = 30.7 bits (66), Expect = 1.6
Identities = 14/34 (41%), Positives = 23/34 (67%)
Frame = +2
Query: 89 SDASSM*SANRLTSAVPSQPTRLLLSMPKLQSLS 190
S +SS + N+++ +PS P +L LS P+L +LS
Sbjct: 293 SQSSSSENVNQVSYQLPSDPVQLSLSQPQLNALS 326
>SB_58083| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 727
Score = 30.3 bits (65), Expect = 2.2
Identities = 16/43 (37%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Frame = -3
Query: 224 PVTRISCCTDMSTNSGASAW-IAAVLSVGMGPRSSIGSPITLM 99
P R+SC +ST + +S+W I AVL + R S+ SP++++
Sbjct: 291 PARRVSCSAAISTFNLSSSWLIMAVLRRPLMLRMSVVSPVSMV 333
>SB_44024| Best HMM Match : Flavin_Reduct (HMM E-Value=0.79)
Length = 308
Score = 30.3 bits (65), Expect = 2.2
Identities = 22/51 (43%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Frame = -3
Query: 182 SGASAWIAAV-LSVGMGPRSSIGSPITLMMRPRV-SAPTGIRMGEPESSTG 36
+G A A+ LS G +S S +T +P SAPTGI G+P SSTG
Sbjct: 90 TGTQATSASTGLSFGQLGNTST-STLTAFGQPSTTSAPTGISFGQPTSSTG 139
>SB_53344| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1554
Score = 29.9 bits (64), Expect = 2.9
Identities = 22/60 (36%), Positives = 27/60 (45%)
Frame = -3
Query: 182 SGASAWIAAVLSVGMGPRSSIGSPITLMMRPRVSAPTGIRMGEPESSTGCPRTKPSVPSM 3
SG+S+ A +L GP SS+ P T P PTG+ M P S P P P M
Sbjct: 671 SGSSS--AQMLPPMPGPPSSMSGPTTSRHGP---PPTGLTMNPPTSMGMAPMMPPPGPGM 725
>SB_46099| Best HMM Match : 7tm_1 (HMM E-Value=4.7e-23)
Length = 343
Score = 29.1 bits (62), Expect = 5.0
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +3
Query: 804 WMLPLYFLKPLLNWVSTXLWDPLDST 881
W+ L+F L+WV+T W P +T
Sbjct: 147 WLTSLFFAIVQLSWVNTSAWSPQTAT 172
>SB_12626| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 363
Score = 28.7 bits (61), Expect = 6.6
Identities = 16/32 (50%), Positives = 18/32 (56%)
Frame = +1
Query: 52 GSPIRIPVGAETLGRIINVIGEPIDERGPIPT 147
G PI P+G +GR I IG PI GPI T
Sbjct: 283 GRPIGRPIGL--IGRPIGPIGRPIGPIGPIGT 312
>SB_6555| Best HMM Match : zf-RanBP (HMM E-Value=0.3)
Length = 89
Score = 28.7 bits (61), Expect = 6.6
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +1
Query: 763 DLTDPAPATTFGSLGCYHCTF*SHC*IGYLPXCGI 867
D+ D A+ S C HCTF +H +G CG+
Sbjct: 53 DMEDMTQASRVSSWTCKHCTFINHA-MGSCEMCGL 86
>SB_46345| Best HMM Match : AAA_5 (HMM E-Value=0.053)
Length = 636
Score = 28.3 bits (60), Expect = 8.7
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -1
Query: 865 SHXWVDTQFSNGFRKYSGSIQVSQKW 788
SH W D +N FR+++ S +KW
Sbjct: 242 SHEWSDGVLANTFREHASSTSQDRKW 267
>SB_28616| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 73
Score = 28.3 bits (60), Expect = 8.7
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = -1
Query: 865 SHXWVDTQFSNGFRKYSGSIQVSQKW 788
SH W D +N FR ++ S +KW
Sbjct: 24 SHEWSDGVLANSFRDFASSTTEDRKW 49
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,547,864
Number of Sequences: 59808
Number of extensions: 654089
Number of successful extensions: 2117
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1921
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2109
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2526446612
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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