Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_F_P21
(886 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U10402-2|AAA19068.2| 538|Caenorhabditis elegans Atp synthase su... 468 e-132
AL033512-1|CAA22076.1| 606|Caenorhabditis elegans Hypothetical ... 78 7e-15
AL023815-4|CAF31480.1| 511|Caenorhabditis elegans Hypothetical ... 78 1e-14
AL023815-1|CAA19429.1| 538|Caenorhabditis elegans Hypothetical ... 78 1e-14
AC006708-2|AAF60418.1| 501|Caenorhabditis elegans Temporarily a... 78 1e-14
U41015-2|AAA82311.1| 491|Caenorhabditis elegans Vacuolar h atpa... 77 1e-14
AL023815-3|CAD92384.1| 503|Caenorhabditis elegans Hypothetical ... 59 4e-09
U51998-7|AAA96080.2| 769|Caenorhabditis elegans Hypothetical pr... 31 1.4
U42830-4|AAC48277.1| 487|Caenorhabditis elegans Neuronal igcam ... 29 3.3
Z70684-5|CAA94600.1| 233|Caenorhabditis elegans Hypothetical pr... 29 4.4
Z70684-3|CAA94598.1| 233|Caenorhabditis elegans Hypothetical pr... 29 4.4
AL110484-8|CAB54399.1| 274|Caenorhabditis elegans Hypothetical ... 29 4.4
U39848-1|AAT81210.1| 1338|Caenorhabditis elegans Latrophilin rec... 28 7.7
AY314772-1|AAQ84879.1| 1338|Caenorhabditis elegans latrophilin-l... 28 7.7
>U10402-2|AAA19068.2| 538|Caenorhabditis elegans Atp synthase
subunit protein 2 protein.
Length = 538
Score = 468 bits (1153), Expect = e-132
Identities = 231/268 (86%), Positives = 239/268 (89%)
Frame = +1
Query: 1 AMDGTEGLVRGQPVLDSGSPIRIPVGAETLGRIINVIGEPIDERGPIPTDKTAAIHAEAP 180
AMDGTEGLVRGQPV D+G PI+IPVG ETLGRI+NVIGEPIDERGPI + AAIHAEAP
Sbjct: 121 AMDGTEGLVRGQPVADTGDPIKIPVGPETLGRIMNVIGEPIDERGPIASKNFAAIHAEAP 180
Query: 181 EFVDMSVQQEILVTGIKVVDLLAPYAXXXXXXXXXXXXXXXTVLIMELINNVAKAHGGYS 360
EFV+MSV+QEILVTGIKVVDLLAPYA TVLIMELINNVAKAHGGYS
Sbjct: 181 EFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYS 240
Query: 361 VFAGVGERTREGNDLYHEMIESGVISLKDKTSKVALVYGQMNEPPGARARVALTGLTVAE 540
VFAGVGERTREGNDLYHEMIE GVI LK K SKV+LVYGQMNEPPGARARV LTGLTVAE
Sbjct: 241 VFAGVGERTREGNDLYHEMIEGGVIDLKGKNSKVSLVYGQMNEPPGARARVCLTGLTVAE 300
Query: 541 YFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTTKK 720
YFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMG+MQERITTTKK
Sbjct: 301 YFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGSMQERITTTKK 360
Query: 721 GSITSVQAIYVPADDLTDPAPATTFGSL 804
GSITSVQAIYVPADDLTDPAPATTF L
Sbjct: 361 GSITSVQAIYVPADDLTDPAPATTFAHL 388
Score = 33.1 bits (72), Expect = 0.27
Identities = 15/19 (78%), Positives = 16/19 (84%)
Frame = +2
Query: 806 DATTVLSKAIAELGIYPXV 862
DATTVLS+ IAEL IYP V
Sbjct: 389 DATTVLSRGIAELAIYPAV 407
>AL033512-1|CAA22076.1| 606|Caenorhabditis elegans Hypothetical
protein Y49A3A.2 protein.
Length = 606
Score = 78.2 bits (184), Expect = 7e-15
Identities = 61/205 (29%), Positives = 91/205 (44%), Gaps = 10/205 (4%)
Frame = +1
Query: 214 LVTGIKVVDLLAPYAXXXXXXXXXXXXXXXTVLIMELINNVAKAHGGYSVFAGVGERTRE 393
L+ G +V+D L P TV+ L ++ ++ G GER E
Sbjct: 216 LLCGQRVLDALFPCVQGGTTAIPGAFGCGKTVISQSLSKY---SNSDAIIYVGCGERGNE 272
Query: 394 GNDLYHEMIESGVISLKDKTS---KVALVYGQMNEPPGARARVALTGLTVAEYFRDQEGQ 564
+++ + E + TS + ALV N P AR TG+T+AEYFRD G
Sbjct: 273 MSEVLRDFPELTMEVEGVTTSIMKRTALVANTSNMPVAAREASIYTGITLAEYFRDM-GL 331
Query: 565 DVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTTK-------KG 723
+V + D+ R+ +A E+S LG +P+ GY LA + + ER K +G
Sbjct: 332 NVAMMADSTSRWAEALREISGRLGEMPADSGYPAYLAARLASFYERAGRVKCLGSPEREG 391
Query: 724 SITSVQAIYVPADDLTDPAPATTFG 798
S+T V A+ P D DP + T G
Sbjct: 392 SVTIVGAVSPPGGDFADPVTSATLG 416
Score = 31.9 bits (69), Expect = 0.63
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +1
Query: 13 TEGLVRGQPVLDSGSPIRIPVGAETLGRIINVIGEPIDE 129
T G+ G PVL +G P+ + +G +G I + I P+ +
Sbjct: 59 TSGVTIGDPVLRTGKPLSVELGPGIMGSIFDGIQRPLKD 97
>AL023815-4|CAF31480.1| 511|Caenorhabditis elegans Hypothetical
protein H28O16.1d protein.
Length = 511
Score = 77.8 bits (183), Expect = 1e-14
Identities = 62/270 (22%), Positives = 118/270 (43%), Gaps = 12/270 (4%)
Frame = +1
Query: 10 GTEGLVR-GQPVLDSGSPIRIPVGAETLGRIINVIGEPIDERGPIPTDKTAAIHAEAPEF 186
G + ++R G V +G+ + +PVG LGR+++ +G PID +GPI + + + +AP
Sbjct: 78 GNDKVIREGDIVKRTGAIVDVPVGDGLLGRVVDALGNPIDGKGPIANARRSRVEVKAPGI 137
Query: 187 VDMSVQQEILVTGIKVVDLLAPYAXXXXXXXXXXXXXXXTVLIMELINNVAKAHGG---- 354
+ +E +VTG+K VD L P T + ++ I N + +
Sbjct: 138 IPRLSVREPMVTGVKAVDSLVPIGRGQRELIIGDRQTGKTAIAIDTIINQKRFNDAGDDK 197
Query: 355 ---YSVFAGVGERTREGNDLYHEMIESGVISLKDKTSKVALVYGQMNEPPGARARVALTG 525
+ ++ VG++ + + ++G + D T +V ++ + +G
Sbjct: 198 KKLFCIYVAVGQKRSTVAQIVKRLTDAGAM---DYT---IVVSATASDAAPLQFLAPYSG 251
Query: 526 LTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERI 705
+ E+FRD G+ L+ D++ + A ++S LL R P Y + + ER
Sbjct: 252 CAMGEHFRD-NGKHALIIFDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERA 310
Query: 706 TTTKK----GSITSVQAIYVPADDLTDPAP 783
GS+T++ I A D++ P
Sbjct: 311 AKMNNSLGGGSLTALPVIETQAGDVSAYIP 340
>AL023815-1|CAA19429.1| 538|Caenorhabditis elegans Hypothetical
protein H28O16.1a protein.
Length = 538
Score = 77.8 bits (183), Expect = 1e-14
Identities = 62/270 (22%), Positives = 118/270 (43%), Gaps = 12/270 (4%)
Frame = +1
Query: 10 GTEGLVR-GQPVLDSGSPIRIPVGAETLGRIINVIGEPIDERGPIPTDKTAAIHAEAPEF 186
G + ++R G V +G+ + +PVG LGR+++ +G PID +GPI + + + +AP
Sbjct: 105 GNDKVIREGDIVKRTGAIVDVPVGDGLLGRVVDALGNPIDGKGPIANARRSRVEVKAPGI 164
Query: 187 VDMSVQQEILVTGIKVVDLLAPYAXXXXXXXXXXXXXXXTVLIMELINNVAKAHGG---- 354
+ +E +VTG+K VD L P T + ++ I N + +
Sbjct: 165 IPRLSVREPMVTGVKAVDSLVPIGRGQRELIIGDRQTGKTAIAIDTIINQKRFNDAGDDK 224
Query: 355 ---YSVFAGVGERTREGNDLYHEMIESGVISLKDKTSKVALVYGQMNEPPGARARVALTG 525
+ ++ VG++ + + ++G + D T +V ++ + +G
Sbjct: 225 KKLFCIYVAVGQKRSTVAQIVKRLTDAGAM---DYT---IVVSATASDAAPLQFLAPYSG 278
Query: 526 LTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERI 705
+ E+FRD G+ L+ D++ + A ++S LL R P Y + + ER
Sbjct: 279 CAMGEHFRD-NGKHALIIFDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERA 337
Query: 706 TTTKK----GSITSVQAIYVPADDLTDPAP 783
GS+T++ I A D++ P
Sbjct: 338 AKMNNSLGGGSLTALPVIETQAGDVSAYIP 367
>AC006708-2|AAF60418.1| 501|Caenorhabditis elegans Temporarily
assigned gene nameprotein 300 protein.
Length = 501
Score = 77.8 bits (183), Expect = 1e-14
Identities = 63/259 (24%), Positives = 109/259 (42%), Gaps = 11/259 (4%)
Frame = +1
Query: 49 SGSPIRIPVGAETLGRIINVIGEPIDERGPIPTDKTAAIHAEAPEFVDMSVQQEILVTGI 228
+G R PV + LGRI N G+PID+ P+ + I+ + + +E++ TGI
Sbjct: 109 TGDIFRSPVSLDMLGRIFNGSGKPIDKGPPVLPEDYLDINGQPINPFNRIYPEEMIQTGI 168
Query: 229 KVVDLLAPYAXXXXXXXXXXXXXXXTVLIMELINN--VAKAHGGYS-------VFAGVGE 381
+D++ A + +++ + + G + VFA +G
Sbjct: 169 SAIDVMNSIARGQKIPIFSAAGLPHNEIAAQIVRQGGLVQLPGRNNETVNFAIVFAAMGV 228
Query: 382 RTREGNDLYHEMIESGVISLKDKTSKVALVYGQMNEPPGARARVALTGLTVAEYFRDQEG 561
+ E G + V L N+P R LT AE+F G
Sbjct: 229 NMETARFFKQDFEECGSMD------NVCLFLNLANDPTIERIITPRIALTAAEFFAYHCG 282
Query: 562 QDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTTK--KGSITS 735
+ VL+ + ++ + +A E+SA +P G+ + TD+ T+ ER K +GSIT
Sbjct: 283 KHVLVVLTDMSSYAEALREISAAREEVPGRRGFPGYMYTDLATIYERAGRVKGREGSITQ 342
Query: 736 VQAIYVPADDLTDPAPATT 792
+ + +P +D+T P P T
Sbjct: 343 IPILTMPNNDITHPIPDLT 361
>U41015-2|AAA82311.1| 491|Caenorhabditis elegans Vacuolar h atpase
protein 12 protein.
Length = 491
Score = 77.4 bits (182), Expect = 1e-14
Identities = 66/274 (24%), Positives = 114/274 (41%), Gaps = 12/274 (4%)
Frame = +1
Query: 7 DGTEGLVRGQPVLD-SGSPIRIPVGAETLGRIINVIGEPIDERGPIPTDKTAAIHAEAPE 183
+GT G+ + + +G +R PV + LGRI N G+PID+ P+ + I+ +
Sbjct: 82 EGTSGIDAKNTICEFTGDILRTPVSEDMLGRIFNGSGKPIDKGPPVLAEDFLDINGQPIN 141
Query: 184 FVDMSVQQEILVTGIKVVDLLAPYAXXXXXXXXXXXXXXXTVLIMELINNVA------KA 345
+E++ TGI +D++ A + +++ +
Sbjct: 142 PWSRIYPEEMIQTGISAIDVMNSIARGQKIPIFSASGLPHNEIAAQIVRQGGLVQLPDRP 201
Query: 346 HGGYS---VFAGVGERTREGNDLYHEMIESGVISLKDKTSKVALVYGQMNEPPGARARVA 516
H + VFA +G + E+G + V L N+P R
Sbjct: 202 HEQTNFAIVFAAMGVNMETARFFKQDFEENGSME------NVCLFLNLANDPTIERIITP 255
Query: 517 LTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQ 696
LT AE+ Q + VL+ + ++ + +A EVSA +P G+ + TD+ T+
Sbjct: 256 RIALTSAEFLAYQCKKHVLVVLTDMSSYAEALREVSAAREEVPGRRGFPGYMYTDLATIY 315
Query: 697 ERI--TTTKKGSITSVQAIYVPADDLTDPAPATT 792
ER + GSIT + + +P DD+T P P T
Sbjct: 316 ERAGRVEGRDGSITQIPILTMPNDDITHPIPDLT 349
>AL023815-3|CAD92384.1| 503|Caenorhabditis elegans Hypothetical
protein H28O16.1c protein.
Length = 503
Score = 59.3 bits (137), Expect = 4e-09
Identities = 52/237 (21%), Positives = 98/237 (41%), Gaps = 11/237 (4%)
Frame = +1
Query: 106 VIGEPIDERGPIPTDKTAAIHAEAPEFVDMSVQQEILVTGIKVVDLLAPYAXXXXXXXXX 285
V+G PID +GPI + + + +AP + +E +VTG+K VD L P
Sbjct: 103 VLGNPIDGKGPIANARRSRVEVKAPGIIPRLSVREPMVTGVKAVDSLVPIGRGQRELIIG 162
Query: 286 XXXXXXTVLIMELINNVAKAHGG-------YSVFAGVGERTREGNDLYHEMIESGVISLK 444
T + ++ I N + + + ++ VG++ + + ++G +
Sbjct: 163 DRQTGKTAIAIDTIINQKRFNDAGDDKKKLFCIYVAVGQKRSTVAQIVKRLTDAGAM--- 219
Query: 445 DKTSKVALVYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVS 624
D T +V ++ + +G + E+FRD G+ L+ D++ + A ++S
Sbjct: 220 DYT---IVVSATASDAAPLQFLAPYSGCAMGEHFRD-NGKHALIIFDDLSKQAVAYRQMS 275
Query: 625 ALLGRIPSAVGYQPTLATDMGTMQERITTTKK----GSITSVQAIYVPADDLTDPAP 783
LL R P Y + + ER GS+T++ I A D++ P
Sbjct: 276 LLLRRPPGREAYPGDVFYLHSRLLERAAKMNNSLGGGSLTALPVIETQAGDVSAYIP 332
>U51998-7|AAA96080.2| 769|Caenorhabditis elegans Hypothetical
protein C12D12.1a protein.
Length = 769
Score = 30.7 bits (66), Expect = 1.4
Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 5/81 (6%)
Frame = -3
Query: 233 TFIPVTRISCCTDMSTNSGASAWIAAVLSVGMGPRS-SIGSPITL-MMRPRV---SAPTG 69
TF PVT +S + +T + + + P + + +P T+ M P + P
Sbjct: 468 TFYPVTTVSTMSPPTTVTVPTTPTPVPTTTNTPPANPTTATPTTVGTMTPSTGTTTVPVP 527
Query: 68 IRMGEPESSTGCPRTKPSVPS 6
G P + T P TKP+VPS
Sbjct: 528 TTTGSPTTQTTAPVTKPTVPS 548
>U42830-4|AAC48277.1| 487|Caenorhabditis elegans Neuronal igcam
protein 3 protein.
Length = 487
Score = 29.5 bits (63), Expect = 3.3
Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Frame = +1
Query: 7 DGTEGLVRGQPV-LDSGSPIRIPVGAETLGRIINVIGEPIDERGPIPTDKTAAIHAEAPE 183
D +G + G+P+ +D G ++ P G E + ++ N GEP+DE A I + E
Sbjct: 152 DTVKGALLGEPITIDCG--VKGPSGKEPMIQMTNGNGEPLDEEIWTIAGNEATIDSLKKE 209
Query: 184 FVDMSV 201
+++V
Sbjct: 210 HAELTV 215
>Z70684-5|CAA94600.1| 233|Caenorhabditis elegans Hypothetical
protein F28D1.5 protein.
Length = 233
Score = 29.1 bits (62), Expect = 4.4
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = +3
Query: 294 CGQNCIDYGTDQQCCQSPW 350
C C+ Y TDQ+CC+ +
Sbjct: 168 CKSGCLGYNTDQECCRGAY 186
>Z70684-3|CAA94598.1| 233|Caenorhabditis elegans Hypothetical
protein F28D1.3 protein.
Length = 233
Score = 29.1 bits (62), Expect = 4.4
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = +3
Query: 294 CGQNCIDYGTDQQCCQSPW 350
C C+ Y TDQ+CC+ +
Sbjct: 168 CKSGCLGYNTDQECCRGAY 186
>AL110484-8|CAB54399.1| 274|Caenorhabditis elegans Hypothetical
protein Y38E10A.8 protein.
Length = 274
Score = 29.1 bits (62), Expect = 4.4
Identities = 11/40 (27%), Positives = 20/40 (50%)
Frame = +3
Query: 183 VCRHVCAAGDSRNWYKSRRSARSLCQRWKDWVVWRSWCGQ 302
+C +C ++W K R+ARS + W++ + W Q
Sbjct: 96 ICMELCEQNTLKDWIKGNRTARS-----RPWMLMKDWIKQ 130
>U39848-1|AAT81210.1| 1338|Caenorhabditis elegans Latrophilin
receptor protein 2 protein.
Length = 1338
Score = 28.3 bits (60), Expect = 7.7
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = +1
Query: 352 GYSVFAGVGERTREGNDLYHEMIESGVI--SLKDKTSKVAL 468
GY FAG G+ ND H +I S VI S+++ T V L
Sbjct: 780 GYYAFAGFGQLLNNNND--HTLINSQVIGASIQNATQSVTL 818
>AY314772-1|AAQ84879.1| 1338|Caenorhabditis elegans latrophilin-like
protein LAT-2 protein.
Length = 1338
Score = 28.3 bits (60), Expect = 7.7
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = +1
Query: 352 GYSVFAGVGERTREGNDLYHEMIESGVI--SLKDKTSKVAL 468
GY FAG G+ ND H +I S VI S+++ T V L
Sbjct: 780 GYYAFAGFGQLLNNNND--HTLINSQVIGASIQNATQSVTL 818
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,541,521
Number of Sequences: 27780
Number of extensions: 487636
Number of successful extensions: 1495
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1358
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1491
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2234373834
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -