Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_P19
         (878 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM712905-1|CAN84644.1|  102|Tribolium castaneum hypothetical pro...    31   0.012
AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory recept...    23   3.2  
AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.     21   9.7  

>AM712905-1|CAN84644.1|  102|Tribolium castaneum hypothetical
           protein protein.
          Length = 102

 Score = 31.1 bits (67), Expect = 0.012
 Identities = 31/102 (30%), Positives = 36/102 (35%)
 Frame = +1

Query: 463 MKIRFCIFIHSRRINRCNFSQFFXXXXXXXXXXXXXXXXXXXXXXXXXCNYWGIY*LISF 642
           M  R CI I S R N  NFS+F                               I  LI  
Sbjct: 1   MSTRICIPISSGRTNGSNFSKFINCHYTSGHLLGSSSLPLRSFYRSRIRYQGRISSLILP 60

Query: 643 IYRPFIKFLYTKNSIFYNIYWSKYNIFSTTFFRFSWNTSTIF 768
           IY    K    + +I  +I  SK NI S+ F R   N  TIF
Sbjct: 61  IYGLSTKPKIMQGAISNHIQGSKPNILSSAFPRLKRNARTIF 102


>AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory receptor
           candidate 48 protein.
          Length = 408

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +1

Query: 640 FIYRPFIKFLYTKNSIFYNIYWSKYNIFSTTFFRFSWNTST 762
           F++  FI +L+T   I+Y+++ +    F  T  +F   TST
Sbjct: 145 FVFCYFI-YLFTVYYIYYSVHEASIINFGYTLAKFMIFTST 184


>AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund
          protein.
          Length = 301

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 7/19 (36%), Positives = 10/19 (52%)
 Frame = +1

Query: 1  MSCRDYSXXXXXXTTCFSW 57
          +SC+D+       TT  SW
Sbjct: 19 LSCKDFDTLYRDCTTASSW 37


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,452
Number of Sequences: 336
Number of extensions: 3121
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 24306755
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)