Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_P19
         (878 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...   281   1e-76

>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe|chr
            mitochondrial|||Manual
          Length = 537

 Score =  281 bits (688), Expect = 1e-76
 Identities = 139/272 (51%), Positives = 179/272 (65%), Gaps = 1/272 (0%)
 Frame = +2

Query: 5    AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYIL 184
            A+ IT+          AG + +L +DRNLNTSF+ P GGGDP+LYQHLF FFGHPEVYIL
Sbjct: 194  AIMITSILLLLTLPVLAGGLFMLFSDRNLNTSFYAPEGGGDPVLYQHLFWFFGHPEVYIL 253

Query: 185  ILPGFGIISHIISQERGKKETFXXXXXXXXXXXXXXXXFIV*AHHIFTVGIDIDTRAYFT 364
            I+P FG++SHII      K  F                 +V +HH+FTVG+D+DTRAYF+
Sbjct: 254  IMPAFGVVSHII-PSLAHKPIFGKEGMLWAMLSIALLGLMVWSHHLFTVGLDVDTRAYFS 312

Query: 365  SATIIIAVPTGIKIFR*LATIHGTQINYN-PNIL*RLGFVFLFTVGGLTGVILANSSIDI 541
            +AT++IA+PTGIKIF  LAT+ G  I ++   +L  +GF+ LFT+GGLTGVIL+NS +DI
Sbjct: 313  AATMVIAIPTGIKIFSWLATLTGGAIQWSRVPMLYAIGFLILFTIGGLTGVILSNSVLDI 372

Query: 542  TLHDTYYVVAHFHYVLSXXXXXXXXXXXXN*YPLFTGLSLNSYILKIQFFTIFIGVNITF 721
              HDTY+VVAHFHYVLS               P   GL  N  +  IQF+ +FIGVNI F
Sbjct: 373  AFHDTYFVVAHFHYVLSMGALFGLCGAYY-WSPKMFGLMYNETLASIQFWILFIGVNIVF 431

Query: 722  FPQHFLGLAGIPRRYSDYPDSYIS*NIIXSLG 817
             PQHFLGL G+PRR  DYP++++  N + S+G
Sbjct: 432  GPQHFLGLNGMPRRIPDYPEAFVGWNFVSSIG 463


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,540,718
Number of Sequences: 5004
Number of extensions: 46898
Number of successful extensions: 125
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)