Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_P19
         (878 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5032| Best HMM Match : COX1 (HMM E-Value=8.3e-10)                  200   2e-51
SB_20687| Best HMM Match : No HMM Matches (HMM E-Value=.)              78   8e-15
SB_57614| Best HMM Match : No HMM Matches (HMM E-Value=.)              45   9e-05
SB_5733| Best HMM Match : No HMM Matches (HMM E-Value=.)               45   9e-05
SB_50221| Best HMM Match : No HMM Matches (HMM E-Value=.)              45   9e-05
SB_39830| Best HMM Match : No HMM Matches (HMM E-Value=.)              45   9e-05
SB_15102| Best HMM Match : No HMM Matches (HMM E-Value=.)              45   9e-05
SB_3498| Best HMM Match : No HMM Matches (HMM E-Value=.)               45   9e-05
SB_36505| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.1  
SB_27609| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.8  

>SB_5032| Best HMM Match : COX1 (HMM E-Value=8.3e-10)
          Length = 229

 Score =  200 bits (487), Expect = 2e-51
 Identities = 95/161 (59%), Positives = 116/161 (72%)
 Frame = +2

Query: 335 IDIDTRAYFTSATIIIAVPTGIKIFR*LATIHGTQINYNPNIL*RLGFVFLFTVGGLTGV 514
           +++DTRAYFT+AT+IIAVPTGIK+F  LAT++G  I  +  +L  +GFVFLFT+GGLTGV
Sbjct: 1   MNVDTRAYFTAATMIIAVPTGIKVFSWLATLYGGAIRLDTPMLWAIGFVFLFTIGGLTGV 60

Query: 515 ILANSSIDITLHDTYYVVAHFHYVLSXXXXXXXXXXXXN*YPLFTGLSLNSYILKIQFFT 694
           ILANSS+D+ +HDTYYVVAHFHYVLS              +   TG   N    KI F+ 
Sbjct: 61  ILANSSLDVVMHDTYYVVAHFHYVLSMGAVFAIFAGFYFWFGKITGYCYNELYGKIHFWI 120

Query: 695 IFIGVNITFFPQHFLGLAGIPRRYSDYPDSYIS*NIIXSLG 817
           +FIGVNITFFPQHFLGLAG PRRYSD+ D Y   N++ S G
Sbjct: 121 MFIGVNITFFPQHFLGLAGFPRRYSDFADGYAGWNLVCSFG 161


>SB_20687| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 143

 Score = 78.2 bits (184), Expect = 8e-15
 Identities = 35/57 (61%), Positives = 40/57 (70%)
 Frame = +2

Query: 647 TGLSLNSYILKIQFFTIFIGVNITFFPQHFLGLAGIPRRYSDYPDSYIS*NIIXSLG 817
           TG   N    KI F+ +FIGVNITFFPQHFLGLAG PRRYSD+ D Y   N++ S G
Sbjct: 19  TGYCYNELYGKIHFWIMFIGVNITFFPQHFLGLAGFPRRYSDFADGYAGWNLVCSFG 75


>SB_57614| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 95

 Score = 44.8 bits (101), Expect = 9e-05
 Identities = 18/29 (62%), Positives = 21/29 (72%)
 Frame = +2

Query: 731 HFLGLAGIPRRYSDYPDSYIS*NIIXSLG 817
           HFLGLAG PRRYSD+ D Y   N++ S G
Sbjct: 1   HFLGLAGFPRRYSDFADGYAGWNLVCSFG 29


>SB_5733| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 70

 Score = 44.8 bits (101), Expect = 9e-05
 Identities = 18/29 (62%), Positives = 21/29 (72%)
 Frame = +2

Query: 731 HFLGLAGIPRRYSDYPDSYIS*NIIXSLG 817
           HFLGLAG PRRYSD+ D Y   N++ S G
Sbjct: 1   HFLGLAGFPRRYSDFADGYAGWNLVCSFG 29


>SB_50221| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 95

 Score = 44.8 bits (101), Expect = 9e-05
 Identities = 18/29 (62%), Positives = 21/29 (72%)
 Frame = +2

Query: 731 HFLGLAGIPRRYSDYPDSYIS*NIIXSLG 817
           HFLGLAG PRRYSD+ D Y   N++ S G
Sbjct: 1   HFLGLAGFPRRYSDFADGYAGWNLVCSFG 29


>SB_39830| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 95

 Score = 44.8 bits (101), Expect = 9e-05
 Identities = 18/29 (62%), Positives = 21/29 (72%)
 Frame = +2

Query: 731 HFLGLAGIPRRYSDYPDSYIS*NIIXSLG 817
           HFLGLAG PRRYSD+ D Y   N++ S G
Sbjct: 1   HFLGLAGFPRRYSDFADGYAGWNLVCSFG 29


>SB_15102| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 95

 Score = 44.8 bits (101), Expect = 9e-05
 Identities = 18/29 (62%), Positives = 21/29 (72%)
 Frame = +2

Query: 731 HFLGLAGIPRRYSDYPDSYIS*NIIXSLG 817
           HFLGLAG PRRYSD+ D Y   N++ S G
Sbjct: 1   HFLGLAGFPRRYSDFADGYAGWNLVCSFG 29


>SB_3498| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 95

 Score = 44.8 bits (101), Expect = 9e-05
 Identities = 18/29 (62%), Positives = 21/29 (72%)
 Frame = +2

Query: 731 HFLGLAGIPRRYSDYPDSYIS*NIIXSLG 817
           HFLGLAG PRRYSD+ D Y   N++ S G
Sbjct: 1   HFLGLAGFPRRYSDFADGYAGWNLVCSFG 29


>SB_36505| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 210

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = +2

Query: 314 HHIFTVGIDIDTRAYFTSATIIIAVPTGIKIFR*LATIHGTQINYNPNIL 463
           HH+ T+ I +         T+I   PT I +   +  +H T IN +P ++
Sbjct: 14  HHLHTIIIHLHPTVIHLHPTVIFLHPTVIHLHPTVLNLHPTIINLHPTVI 63


>SB_27609| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 707

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
 Frame = +1

Query: 634 ISFIYRPFIKFLYTKNSIFYNIYWSK--YNIFSTTFFRFSWNT 756
           + FIY   + FL +KN  F+  YW+   YN F        W T
Sbjct: 14  VGFIYVAKVVFLLSKNKSFFFEYWTPVVYNAFGQRSPNSRWRT 56


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,299,058
Number of Sequences: 59808
Number of extensions: 308880
Number of successful extensions: 525
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 488
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 524
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2502612210
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)