Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_P18
         (938 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28681| Best HMM Match : Dpy-30 (HMM E-Value=2.2e-19)                99   4e-21
SB_8559| Best HMM Match : Dpy-30 (HMM E-Value=3.7e-11)                 40   0.002
SB_13568| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.25 
SB_17465| Best HMM Match : Dpy-30 (HMM E-Value=0.05)                   31   1.0  
SB_33596| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.4  
SB_3457| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   3.1  
SB_54463| Best HMM Match : TolA (HMM E-Value=0.39)                     28   9.5  
SB_13207| Best HMM Match : Extensin_2 (HMM E-Value=0.061)              28   9.5  

>SB_28681| Best HMM Match : Dpy-30 (HMM E-Value=2.2e-19)
          Length = 371

 Score = 99.1 bits (236), Expect = 4e-21
 Identities = 48/80 (60%), Positives = 65/80 (81%)
 Frame = +2

Query: 143 QSTTKIPDSVKKIILMEKDNEANANRKSRIDLNALPTRQYLDQTVVPILLQGLSALAKER 322
           Q+   + ++++KII  EK+ EA+   K+++DL +LPTR YLDQTVVPILLQGL+ LAKER
Sbjct: 290 QAEIGLTENLQKIIEKEKE-EADKPTKAKVDLQSLPTRAYLDQTVVPILLQGLATLAKER 348

Query: 323 PPDPINYLAAYLLKNKTTFE 382
           PP+ I+YLAAYLLKNK+ +E
Sbjct: 349 PPNAIDYLAAYLLKNKSQYE 368


>SB_8559| Best HMM Match : Dpy-30 (HMM E-Value=3.7e-11)
          Length = 806

 Score = 40.3 bits (90), Expect = 0.002
 Identities = 18/52 (34%), Positives = 29/52 (55%)
 Frame = +2

Query: 203 EANANRKSRIDLNALPTRQYLDQTVVPILLQGLSALAKERPPDPINYLAAYL 358
           E     +  ++  ++P R YL + V+P L QGL    K RP DPI+++ + L
Sbjct: 638 EVKKQEQELLENQSIPLRNYLMKHVMPTLTQGLIEACKVRPDDPIDFVVSML 689


>SB_13568| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 324

 Score = 33.5 bits (73), Expect = 0.25
 Identities = 17/57 (29%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
 Frame = +2

Query: 92  LQPMSESSTQI--NHNKEEQSTTKIPDSVKKIILMEKDNEANANRKSRIDLNALPTR 256
           L+P+ E+ST    +H  +E+    +PDS +K  L+E +NE+ ++  ++ D    P++
Sbjct: 268 LEPVGEASTSRAGDHEMDEEEARCLPDSQRKTALVESENESWSDGGNKEDTPFDPSK 324


>SB_17465| Best HMM Match : Dpy-30 (HMM E-Value=0.05)
          Length = 249

 Score = 31.5 bits (68), Expect = 1.0
 Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 3/80 (3%)
 Frame = +2

Query: 149 TTKIP-DSVKKIILMEKDNEANANRKSRIDLNALPTRQY-LDQTVVPILLQGLSALAKER 322
           T KIP D + K  L   DNE  A+ +  +  N LPT    +++ +  +  +GL+      
Sbjct: 89  TRKIPLDVLAKDWLY--DNELTADARVYLVENLLPTLILGVEKLLDEVTKRGLTDSEGFC 146

Query: 323 PP-DPINYLAAYLLKNKTTF 379
           P  +PINYLA YL++N   +
Sbjct: 147 PDFNPINYLAQYLMRNNLKY 166


>SB_33596| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 881

 Score = 30.3 bits (65), Expect = 2.4
 Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
 Frame = +2

Query: 161 PDSVK--KIILMEKDNEANANRKSRIDLNALPTRQYLDQTVVPILLQGLSALAKERPPDP 334
           PD VK    +L EK+         R D  + P R+ +  TV+P   QG +  +  +P DP
Sbjct: 274 PDKVKAKSFLLNEKERSLKEQFMQRQDKKSAPVRRVVMPTVIP--TQG-TQQSGPKPDDP 330

Query: 335 INYLAA 352
           ++  AA
Sbjct: 331 VSTAAA 336


>SB_3457| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 848

 Score = 29.9 bits (64), Expect = 3.1
 Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
 Frame = +2

Query: 35  GSHHNKIR*YYFFKVQLK*LQPMSESSTQINHNKEEQSTTKIPDS----VKKIILMEKDN 202
           G H + +  YY+FK+QL  +   +   +      + +S TK  DS    V+ II+++  N
Sbjct: 723 GEHCDALISYYYFKLQLTTVTSATHMRSASKERVDVESDTKAMDSNAPKVRNIIVVKTCN 782

Query: 203 EAN 211
           + N
Sbjct: 783 DCN 785


>SB_54463| Best HMM Match : TolA (HMM E-Value=0.39)
          Length = 461

 Score = 28.3 bits (60), Expect = 9.5
 Identities = 25/99 (25%), Positives = 43/99 (43%)
 Frame = +2

Query: 98  PMSESSTQINHNKEEQSTTKIPDSVKKIILMEKDNEANANRKSRIDLNALPTRQYLDQTV 277
           P + ++      + +Q   K   + KK    +      + R+SR D+N  PT++   +  
Sbjct: 70  PPTSANDGDTSKENQQLLHKCAQAQKKKAKRKNQRPKTSKRRSRKDINECPTKEDGPE-- 127

Query: 278 VPILLQGLSALAKERPPDPINYLAAYLLKNKTTFELANS 394
                  LS + +ER  D I + A  +  +KT  ELA S
Sbjct: 128 -------LSVIKRER-ADEIGHQAEEITPHKTASELAAS 158


>SB_13207| Best HMM Match : Extensin_2 (HMM E-Value=0.061)
          Length = 2735

 Score = 28.3 bits (60), Expect = 9.5
 Identities = 16/58 (27%), Positives = 29/58 (50%)
 Frame = +2

Query: 107  ESSTQINHNKEEQSTTKIPDSVKKIILMEKDNEANANRKSRIDLNALPTRQYLDQTVV 280
            + S  +N N  ++ T   P++        K+N+ N+ R+    LN +PT Q L Q ++
Sbjct: 1870 QHSVNVNINTAKKQTVATPET--------KNNDKNSKRQKISILNRIPTMQVLPQKIL 1919


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,646,672
Number of Sequences: 59808
Number of extensions: 483797
Number of successful extensions: 1009
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 919
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1008
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2740956230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)