Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_P18
         (938 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    22   7.0  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    22   7.0  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    22   7.0  

>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.2 bits (45), Expect = 7.0
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = +1

Query: 766 IFCP*TIVKXQKYNGFHTATTKIXFKYYSXXSGL*QKVIKLTI 894
           I+ P T    +K + FH ATT   F      SG   + I+LTI
Sbjct: 93  IWVPDTFFVNEKQSYFHIATTSNEF-IRIHHSGSITRSIRLTI 134


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.2 bits (45), Expect = 7.0
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = +1

Query: 766 IFCP*TIVKXQKYNGFHTATTKIXFKYYSXXSGL*QKVIKLTI 894
           I+ P T    +K + FH ATT   F      SG   + I+LTI
Sbjct: 93  IWVPDTFFVNEKQSYFHIATTSNEF-IRIHHSGSITRSIRLTI 134


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 22.2 bits (45), Expect = 7.0
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = +1

Query: 766 IFCP*TIVKXQKYNGFHTATTKIXFKYYSXXSGL*QKVIKLTI 894
           I+ P T    +K + FH ATT   F      SG   + I+LTI
Sbjct: 32  IWVPDTFFVNEKQSYFHIATTSNEF-IRIHHSGSITRSIRLTI 73


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 252,222
Number of Sequences: 438
Number of extensions: 5308
Number of successful extensions: 22
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30718506
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)