Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_P15
         (460 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces ...    27   1.8  
SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr 1||...    25   4.2  
SPAC1952.07 |rad1||checkpoint clamp complex protein Rad1|Schizos...    25   7.3  
SPAC1786.03 |cut11|SPAC24C9.01|integral membrane nucleoporin|Sch...    24   9.7  

>SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 965

 Score = 26.6 bits (56), Expect = 1.8
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +3

Query: 12  TKILLLNVHSSNYNNEWLSVLSASFL 89
           T I LLN  SS  + EW+S++S + L
Sbjct: 377 TLICLLNFQSSLLSFEWISIISRALL 402


>SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 923

 Score = 25.4 bits (53), Expect = 4.2
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -2

Query: 342 KKYSCYTIFEPITTTILRVSQFRY 271
           K YSC  ++     T+ R+S+F Y
Sbjct: 146 KNYSCIAVYSTEDCTLERISKFSY 169


>SPAC1952.07 |rad1||checkpoint clamp complex protein
           Rad1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 323

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 9/33 (27%), Positives = 18/33 (54%)
 Frame = -1

Query: 364 QYHSFIFKKIFMLYNFRAYNNNNFKSFAISLHP 266
           Q H+F+ K +F  +NF+  ++ +   F   + P
Sbjct: 45  QAHAFLDKSLFQTFNFQGDSDGDTYMFQTMISP 77


>SPAC1786.03 |cut11|SPAC24C9.01|integral membrane
           nucleoporin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +1

Query: 139 SAPSGKRRQTIAFHTNMS*LLRYRELK 219
           S PSG R + + +HT +  +L+ R L+
Sbjct: 7   SFPSGSRTKAVRYHTLLRPILQQRFLR 33


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,363,762
Number of Sequences: 5004
Number of extensions: 24033
Number of successful extensions: 56
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 172312850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)