Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_P15
         (460 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27857| Best HMM Match : Cadherin (HMM E-Value=0)                    27   5.6  
SB_41995| Best HMM Match : ANF_receptor (HMM E-Value=0)                27   5.6  
SB_1171| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.9  

>SB_27857| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 2418

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +3

Query: 162  ANDRIPYKYELTFTLSRTQKLALSTLVGLVCTKSCGC 272
            AND  PY  +  +++   +  A+  LV  V  K C C
Sbjct: 1962 ANDHFPYFDQQLYSVQIPESTAVGVLVQEVTAKDCDC 1998


>SB_41995| Best HMM Match : ANF_receptor (HMM E-Value=0)
          Length = 785

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = -2

Query: 132 TAYKIGLTFTLSRTLRNSH*AHSTIHYCNYLNVH 31
           TAY +   + +++ L+  H  +S++H C  L  H
Sbjct: 409 TAYVVDAAYVVAKALKAMHGCNSSLHNCPTLTPH 442


>SB_1171| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1415

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -2

Query: 189 HICMECDRLPTFAARGAVPTAYKIGLTFTLSRT 91
           ++CM  +       RG+VP     G TF ++RT
Sbjct: 193 YVCMRIEIYECLPTRGSVPDVSPPGATFKVNRT 225


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,715,843
Number of Sequences: 59808
Number of extensions: 165879
Number of successful extensions: 299
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 284
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 299
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 932979724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)