Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_P13
         (498 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0466 - 3518315-3521428                                           31   0.68 
03_05_0955 + 29168771-29170507                                         29   2.7  
07_03_0744 + 21121757-21122202,21122316-21122737,21122992-211231...    28   3.6  
11_06_0768 + 27129007-27129038,27129140-27129220,27129723-271300...    28   4.8  
03_02_0599 - 9730204-9730314,9730766-9731549,9731631-9732051,973...    28   4.8  
07_03_1792 + 29569623-29569737,29569848-29569981,29570117-295702...    27   6.3  
11_01_0450 - 3487464-3487844,3487883-3488268,3488883-3489033,348...    27   8.4  
05_01_0564 - 4919294-4919391,4919491-4919620,4919700-4919789,491...    27   8.4  

>07_01_0466 - 3518315-3521428
          Length = 1037

 Score = 30.7 bits (66), Expect = 0.68
 Identities = 16/50 (32%), Positives = 26/50 (52%)
 Frame = -3

Query: 166 DFRHGSDALFVGRT*MQFGVLRTFLL*RSLCSKFXTLCITQDALLKLGKK 17
           + RHG DA  VG   +    +   +  R + SK+  L  + +A+ K+GKK
Sbjct: 522 EVRHGKDAFPVGSASISLATIERRVDDRKVASKWIDLLPSDEAMKKVGKK 571


>03_05_0955 + 29168771-29170507
          Length = 578

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = +1

Query: 133 QQTVRRYHGESHFKPPTMDELPVPKGSWQSHHDANQR 243
           QQ  +R+H   H  PP   +   P    Q HH  +Q+
Sbjct: 26  QQQQQRHHHHHHLPPPPPPQSMAPHHHQQKHHHHHQQ 62


>07_03_0744 +
           21121757-21122202,21122316-21122737,21122992-21123117,
           21123198-21123319,21123413-21123623,21123955-21124192,
           21124284-21124431,21124547-21124879
          Length = 681

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = -3

Query: 244 DVGWHHGATAMSLWALVIHPW 182
           DVGW + A A  L ALV H W
Sbjct: 163 DVGWFNAAVAKILAALVEHTW 183


>11_06_0768 +
           27129007-27129038,27129140-27129220,27129723-27130089,
           27130165-27130255,27130515-27130595,27130764-27131830,
           27132060-27132071,27132465-27133209,27133210-27135244,
           27135712-27135787,27135925-27136029,27137080-27137166
          Length = 1592

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = +2

Query: 110 AKLHLGSSNKQCVATMAKVTSSPPPWMNYQCP 205
           A L  G+ + Q   T A   S PPPW NY  P
Sbjct: 249 AILPWGAKHAQQHGTNAPKQSVPPPWFNYWHP 280


>03_02_0599 -
           9730204-9730314,9730766-9731549,9731631-9732051,
           9732139-9732385,9733730-9733921,9734071-9734204,
           9734316-9734477,9736162-9736200,9737507-9737825
          Length = 802

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 13/38 (34%), Positives = 16/38 (42%)
 Frame = -2

Query: 269 PKRSTALKRRWLASWCDCHEPLGTGNSSMVGGLK*LSP 156
           P R   LK  W   W  CH   G+G+ S +   K   P
Sbjct: 199 PIRKNELKNLWQHVWRRCHSSSGSGSESGIRTQKCTKP 236


>07_03_1792 +
           29569623-29569737,29569848-29569981,29570117-29570284,
           29572817-29573003,29573098-29573422,29573591-29574368,
           29574897-29575022
          Length = 610

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = -2

Query: 269 PKRSTALKRRWLASWCDCHEPLGTGNSS 186
           P R   LK  W   W  CH   G+G+ S
Sbjct: 64  PIRKNELKNLWQHVWRRCHSSSGSGSES 91


>11_01_0450 - 3487464-3487844,3487883-3488268,3488883-3489033,
            3489132-3491102,3492090-3492149,3492240-3492436,
            3492678-3492963
          Length = 1143

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +2

Query: 179  PPWMNYQCPKAHGSR 223
            PPW   + PKAHG+R
Sbjct: 1096 PPWSQEEDPKAHGAR 1110


>05_01_0564 -
           4919294-4919391,4919491-4919620,4919700-4919789,
           4919882-4919987,4920087-4920187,4920347-4920442,
           4920549-4920648,4920761-4920897,4920980-4921111,
           4921222-4921320,4921397-4921594,4921715-4921892,
           4922020-4922075,4922168-4922320,4922422-4922514,
           4922605-4922706,4922817-4922878,4922995-4923090,
           4923354-4923453,4923546-4923617,4923728-4923775,
           4923853-4923996
          Length = 796

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = +3

Query: 15  FFFPSFNSASCVIQSVXNLLH 77
           F +PS++ A C++ S+ N+ H
Sbjct: 446 FIYPSYDYAHCLVDSLENITH 466


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,676,456
Number of Sequences: 37544
Number of extensions: 211096
Number of successful extensions: 571
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 562
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 571
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)