Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_P13
         (498 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9384| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.70 
SB_31032| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.2  
SB_53569| Best HMM Match : EGF_CA (HMM E-Value=0)                      28   4.9  
SB_56590| Best HMM Match : Pox_A32 (HMM E-Value=6.1)                   27   8.6  
SB_47038| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  
SB_43373| Best HMM Match : Herpes_UL3 (HMM E-Value=2.7)                27   8.6  
SB_36025| Best HMM Match : LHC (HMM E-Value=2.9)                       27   8.6  
SB_32520| Best HMM Match : G_glu_transpept (HMM E-Value=4.9e-12)       27   8.6  
SB_30354| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  

>SB_9384| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 468

 Score = 30.7 bits (66), Expect = 0.70
 Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
 Frame = +1

Query: 121 SRFFQQT-VRRYHGESHFKPPTMDELPVPKGSWQSHHDANQRRFNAVLL 264
           SRF +Q+ VR  HG+ H K  + D + V + +W+S   A   +F A+ L
Sbjct: 2   SRFVRQSKVRHVHGD-HAKNDSYDNIRVSENTWESPFCAVNPKFVAISL 49


>SB_31032| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1008

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 18/41 (43%), Positives = 26/41 (63%), Gaps = 6/41 (14%)
 Frame = +1

Query: 142 VRRYHGES----HFKPP--TMDELPVPKGSWQSHHDANQRR 246
           +RR+ GES    H +P   T+DEL  P+G+WQS  +  +RR
Sbjct: 838 LRRWPGESRAPNHTRPDLNTLDELK-PEGAWQSGTELTERR 877


>SB_53569| Best HMM Match : EGF_CA (HMM E-Value=0)
          Length = 921

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 4/41 (9%)
 Frame = +2

Query: 38  CVLRDTKCXKLTTQRALQ*----KCS*HAKLHLGSSNKQCV 148
           C L +  C  +  +R ++     KC   A  HL S NKQC+
Sbjct: 272 CKLNNGGCAHICAERTIRGHVITKCQCRAGYHLHSDNKQCI 312


>SB_56590| Best HMM Match : Pox_A32 (HMM E-Value=6.1)
          Length = 740

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = +1

Query: 145 RRYHGESHFKPP--TMDELPVPKGSWQSHHDANQRR 246
           R     SH +P   T+DE   P+G+WQS  D  +RR
Sbjct: 450 RESRAPSHPRPDLNTLDESK-PEGAWQSGTDLTERR 484


>SB_47038| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 876

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = +1

Query: 145 RRYHGESHFKPP--TMDELPVPKGSWQSHHDANQRR 246
           R     SH +P   T+DE   P+G+WQS  D  +RR
Sbjct: 297 RESRAPSHPRPDLNTLDESK-PEGAWQSGTDLTERR 331


>SB_43373| Best HMM Match : Herpes_UL3 (HMM E-Value=2.7)
          Length = 273

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = +1

Query: 154 HGESHFKPPTMDELPVPKGSWQSHHDAN 237
           H E+ F+ P  D  P P G     HD N
Sbjct: 85  HPETEFEAPASDTAPPPSGEIPEVHDDN 112


>SB_36025| Best HMM Match : LHC (HMM E-Value=2.9)
          Length = 671

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = +1

Query: 145 RRYHGESHFKPP--TMDELPVPKGSWQSHHDANQRR 246
           R     SH +P   T+DE   P+G+WQS  D  +RR
Sbjct: 369 RESRAPSHPRPDLNTLDESK-PEGAWQSGTDLTERR 403


>SB_32520| Best HMM Match : G_glu_transpept (HMM E-Value=4.9e-12)
          Length = 1225

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -2

Query: 206 LGTGNSSMVGGLK*LSPW*RRTVCWKNLDAIWRVTNI 96
           L TG++    G+  +  + RRT    N+DA WR+ N+
Sbjct: 104 LSTGSTISFAGVANILYYNRRTGKTSNIDASWRLPNL 140


>SB_30354| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 669

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = +1

Query: 145 RRYHGESHFKPP--TMDELPVPKGSWQSHHDANQRR 246
           R     SH +P   T+DE   P+G+WQS  D  +RR
Sbjct: 585 RESRAPSHPRPDLNTLDESK-PEGAWQSGTDLTERR 619


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,812,583
Number of Sequences: 59808
Number of extensions: 228485
Number of successful extensions: 614
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 587
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 614
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)