Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_P12
         (925 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate 1-deca...    22   7.8  
DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    22   7.8  
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    22   7.8  

>EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate
           1-decarboxylase protein.
          Length = 540

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 12/41 (29%), Positives = 16/41 (39%)
 Frame = +2

Query: 266 AFGRVRKNCDRCQPRPKELHSDKGSKHSTRTSSPHTFAVRG 388
           AF  + K  D CQ     LH D         S+ H   ++G
Sbjct: 299 AFDPIEKIADVCQKYKLWLHVDAAWGGGALVSAKHRHLLKG 339


>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 10/41 (24%), Positives = 17/41 (41%)
 Frame = -3

Query: 527 FLHPSQVIVMVDFVG*SPREFAGYPWCQFRMEQTFDCRLQW 405
           FLH     ++ D     P  + G  W  F  E++   ++ W
Sbjct: 805 FLHEDNTTLVWDNEQQVPFAYRGNQWVGFDDERSLKTKMAW 845


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +1

Query: 760 LRGISMHITIRAAKILRIP 816
           +R  + H+T+R   I++IP
Sbjct: 637 VRSPTFHLTVRNTSIIKIP 655


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 233,938
Number of Sequences: 336
Number of extensions: 5416
Number of successful extensions: 19
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 25858250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)