Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_P12
         (925 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G6.11c |erg12||mevalonate kinase Erg12 |Schizosaccharomyce...    79   9e-16
SPBC16A3.02c |||mitochondrial peptidase |Schizosaccharomyces pom...    31   0.17 
SPCC338.05c |mms2|spm2|ubiquitin conjugating enzyme Mms2|Schizos...    28   1.6  
SPAC3G6.08 |erv1||sulfhydryl oxidase |Schizosaccharomyces pombe|...    28   2.1  
SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|ch...    27   3.7  
SPAC25B8.04c |||mitochondrial splicing suppressor |Schizosacchar...    27   4.9  
SPAC1250.03 |ubc14||ubiquitin conjugating enzyme Ubc14|Schizosac...    26   6.5  
SPBC21B10.11 |dpm2||dolichol-phosphate mannosyltransferase subun...    26   8.6  
SPAC11E3.14 |||conserved protein|Schizosaccharomyces pombe|chr 1...    26   8.6  
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo...    26   8.6  

>SPAC13G6.11c |erg12||mevalonate kinase Erg12 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 404

 Score = 79.0 bits (186), Expect = 9e-16
 Identities = 68/233 (29%), Positives = 108/233 (46%), Gaps = 3/233 (1%)
 Frame = +3

Query: 231 VSAPGKVILHGEHSVVYGKTAIAVSLGLRSSIVIKEVNTPHEPAVHIHLPCV---DLQET 401
           VS+PGK IL GEH+VVYG TA+A ++ LRS   ++  N      V   +      +LQ  
Sbjct: 7   VSSPGKTILFGEHAVVYGATALAAAVSLRSYCKLQTTNNNEIVIVMSDIGTERRWNLQSL 66

Query: 402 IPLEPTVKSLFHPKLAPGITGKFSWRLPHKIDHDYHLRRVEEYLHLIKPNFDSLPNNQKN 581
                TV+++ HP  +P                          L L++   + L N +  
Sbjct: 67  PWQHVTVENVQHPASSPN-------------------------LDLLQGLGELLKNEENG 101

Query: 582 SLRSFLYVFSGIFGSTYLPVKSMDISMGSELTIGAGTGSSASFAVCLAGALIQLLKLKSS 761
            + S +     +F S   P +   +++ S++ +GAG GSSA+ +V +A +L+        
Sbjct: 102 LIHSAMLCTLYLFTSLSSPSQGCTLTISSQVPLGAGLGSSATISVVVATSLLLAF----- 156

Query: 762 SGNFDAYYDQSSQDFTDTEKEIISEWAXNXEKIMHGTPSGIDNATCTFGNLVS 920
            GN +     S Q+  +    +I  W+   E  +HGTPSGIDNA  T G L++
Sbjct: 157 -GNIEPPSSNSLQN--NKALALIEAWSFLGECCIHGTPSGIDNAVATNGGLIA 206


>SPBC16A3.02c |||mitochondrial peptidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 347

 Score = 31.5 bits (68), Expect = 0.17
 Identities = 20/66 (30%), Positives = 32/66 (48%)
 Frame = +3

Query: 639 VKSMDISMGSELTIGAGTGSSASFAVCLAGALIQLLKLKSSSGNFDAYYDQSSQDFTDTE 818
           V+ M +  G++L I   +G   +FAV LA AL   +   SS+ N D      +    D +
Sbjct: 158 VRQMKVKPGTKLVIEGASGGVGTFAVALAKALECEVTTISSTENLDLCKSLGATHTLDYK 217

Query: 819 KEIISE 836
           K+ + E
Sbjct: 218 KDNLVE 223


>SPCC338.05c |mms2|spm2|ubiquitin conjugating enzyme
           Mms2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 139

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 2/88 (2%)
 Frame = +3

Query: 261 GEHSVVYGKT-AIAVSLGLRSSIVIKEVNTPHEPAVH-IHLPCVDLQETIPLEPTVKSLF 434
           GE S  YG T A  ++L   ++ ++   ++ HE  ++ + + C       P  P + +  
Sbjct: 22  GESSCSYGLTNADDITLSDWNATILGPAHSVHENRIYSLKIHC---DANYPDAPPIVTFV 78

Query: 435 HPKLAPGITGKFSWRLPHKIDHDYHLRR 518
                PG+ G+     PHKID   H +R
Sbjct: 79  SRINLPGVDGETGKVNPHKIDCLRHWKR 106


>SPAC3G6.08 |erv1||sulfhydryl oxidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 182

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +3

Query: 528 YLHLIKPNFDSLPN-NQKNSLRSFLYVFSGIF 620
           +LH +  NF   P   Q+N + SFLY FS  +
Sbjct: 89  FLHAMAANFPKNPTPTQQNDMSSFLYNFSKFY 120


>SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 487

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
 Frame = +3

Query: 735 IQLLKLKSSSGNFDAYYDQSSQDFTDTEKE-IISEW 839
           IQLL  KSS     AYY +    F D E +  + +W
Sbjct: 78  IQLLDFKSSGQQRAAYYSERYHSFRDKEHDTTLEKW 113


>SPAC25B8.04c |||mitochondrial splicing suppressor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 378

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = -2

Query: 420 LSAPMEWSPVDPRTANVCGLLVRVECLLPLSLW 322
           L  P+     DPR   +  L    EC LP S+W
Sbjct: 179 LHRPLSAQSTDPRPTRIFVLGATKECSLPPSIW 211


>SPAC1250.03 |ubc14||ubiquitin conjugating enzyme
           Ubc14|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 155

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +3

Query: 462 GKFSWRLPHKIDHDYHLRRVEEYLHLIKPNFDSLPN 569
           GKF + L   +D+ +    +E    +  PNFDS  N
Sbjct: 54  GKFHFSLKFPLDYPFQPPTIEFTTRIYHPNFDSEGN 89


>SPBC21B10.11 |dpm2||dolichol-phosphate mannosyltransferase subunit
           2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 72

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +3

Query: 708 FAVCLAGALIQLLKLKSSSGNFD 776
           F +CL G  + LL +KSS    D
Sbjct: 49  FGICLIGTFVSLLMIKSSKKKSD 71


>SPAC11E3.14 |||conserved protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 588

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +3

Query: 483 PHKIDHDYHLRRVEEYLH 536
           P  IDHD H++R+ E L+
Sbjct: 22  PDPIDHDLHVQRLRELLY 39


>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
            Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1826

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 9/35 (25%), Positives = 18/35 (51%)
 Frame = +3

Query: 480  LPHKIDHDYHLRRVEEYLHLIKPNFDSLPNNQKNS 584
            L  K+ + +      ++  L++P+   LPN  KN+
Sbjct: 1790 LDQKLSYQFKFENSVKFFRLMQPSLGVLPNTNKNT 1824


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,167,593
Number of Sequences: 5004
Number of extensions: 95513
Number of successful extensions: 303
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 287
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 302
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 467341524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)