Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_F_P12
(925 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_32793| Best HMM Match : KaiC (HMM E-Value=1.2) 46 6e-05
SB_52013| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.003
SB_54032| Best HMM Match : Peptidase_A17 (HMM E-Value=5.20022e-42) 33 0.43
SB_37238| Best HMM Match : Peptidase_A17 (HMM E-Value=0) 31 1.00
SB_193| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.00
SB_17567| Best HMM Match : DnaJ (HMM E-Value=0.0007) 31 1.3
SB_56560| Best HMM Match : GBP_C (HMM E-Value=0.065) 31 1.7
SB_13566| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.7
SB_50620| Best HMM Match : Lectin_C (HMM E-Value=2.1e-14) 31 1.7
SB_39193| Best HMM Match : Peptidase_A16_N (HMM E-Value=0.029) 31 1.7
SB_11898| Best HMM Match : DMP1 (HMM E-Value=1.6) 31 1.7
SB_17959| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.3
SB_12979| Best HMM Match : GYF (HMM E-Value=8.6e-05) 29 7.0
SB_5198| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 7.0
SB_58878| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 7.0
>SB_32793| Best HMM Match : KaiC (HMM E-Value=1.2)
Length = 203
Score = 45.6 bits (103), Expect = 6e-05
Identities = 27/73 (36%), Positives = 39/73 (53%), Gaps = 4/73 (5%)
Frame = +3
Query: 699 SASFAVCLAGALIQLLK-LKSSSGNFDAYYDQSSQDFTDTEKE---IISEWAXNXEKIMH 866
S + A+ L+ I L K +K + + D S + D E E ++ +WA EKIMH
Sbjct: 130 SLAAAMLLSMQTIPLPKYVKKTPESETTAKDTDSYQYDDIETESLRLVCQWAFEAEKIMH 189
Query: 867 GTPSGIDNATCTF 905
G PSGIDN+ T+
Sbjct: 190 GQPSGIDNSIATY 202
>SB_52013| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 64
Score = 39.9 bits (89), Expect = 0.003
Identities = 16/24 (66%), Positives = 20/24 (83%)
Frame = +2
Query: 8 LQEELKTIHAFTQKTLTVDQWKTQ 79
L+EE+KTIHAF+QKT T +QW Q
Sbjct: 38 LEEEMKTIHAFSQKTYTPEQWAKQ 61
>SB_54032| Best HMM Match : Peptidase_A17 (HMM E-Value=5.20022e-42)
Length = 832
Score = 32.7 bits (71), Expect = 0.43
Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = +3
Query: 777 AYYDQSSQDFTDTEKEIISEWAXNXEKIMH-GTPSGIDNATCTFGNLV 917
+YYD+S T+ + + S WA N + ++H T G+++A C N++
Sbjct: 626 SYYDESRSVMTEAKFNLRS-WASNSQPLLHRATLDGVNDANCDSVNVL 672
>SB_37238| Best HMM Match : Peptidase_A17 (HMM E-Value=0)
Length = 1003
Score = 31.5 bits (68), Expect = 1.00
Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = +3
Query: 777 AYYDQSSQDFTDTEKEIISEWAXNXEKIMH-GTPSGIDNATCTFGNLV 917
+YYD+S T + + S WA N + ++H T G+++A C N++
Sbjct: 753 SYYDESRSVMTKAKFNLRS-WASNSQPLLHRATLDGVNDANCDSVNVL 799
>SB_193| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1816
Score = 31.5 bits (68), Expect = 1.00
Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = +3
Query: 777 AYYDQSSQDFTDTEKEIISEWAXNXEKIMH-GTPSGIDNATCTFGNLV 917
+YYD+S T + + S WA N + ++H T G+++A C N++
Sbjct: 1103 SYYDESRSVMTKAKFNLRS-WASNSQPLLHRATLDGVNDANCDSVNVL 1149
>SB_17567| Best HMM Match : DnaJ (HMM E-Value=0.0007)
Length = 831
Score = 31.1 bits (67), Expect = 1.3
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = -2
Query: 783 NMHRNSPKNSSISTAVSMLLLDRRQKTPNCQYPRQ 679
N R SP S+ S ++ L D Q+ PN Q+PR+
Sbjct: 429 NTSRKSPSESNSSPSLDALNADSTQRIPNEQFPRK 463
>SB_56560| Best HMM Match : GBP_C (HMM E-Value=0.065)
Length = 557
Score = 30.7 bits (66), Expect = 1.7
Identities = 17/43 (39%), Positives = 20/43 (46%)
Frame = +3
Query: 750 LKSSSGNFDAYYDQSSQDFTDTEKEIISEWAXNXEKIMHGTPS 878
LKS+ GNFDAY S + E + N I HG PS
Sbjct: 18 LKSNRGNFDAYMTLSRSSTAELEWWEKNNVLDNKNVISHGAPS 60
>SB_13566| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1008
Score = 30.7 bits (66), Expect = 1.7
Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = +3
Query: 777 AYYDQSSQDFTDTEKEIISEWAXNXEKIMH-GTPSGIDNATCTFGNLV 917
+YYD+S T+ + + S WA N + ++H G+++A C N++
Sbjct: 584 SYYDESRSVMTEAKFNLRS-WASNSQPLLHRAALDGVNDANCDSVNVL 630
>SB_50620| Best HMM Match : Lectin_C (HMM E-Value=2.1e-14)
Length = 620
Score = 30.7 bits (66), Expect = 1.7
Identities = 20/64 (31%), Positives = 26/64 (40%), Gaps = 5/64 (7%)
Frame = +1
Query: 352 TNQQSTYICRAWI----YRRPFHWSRQSKVCSILNWHQG*PANSLG-DYPTKSTMTITCE 516
T S++I WI F W+ K+ S NW G P G D +TI +
Sbjct: 58 TQSLSSHISMFWIGLSRSNGAFRWTDGEKLGSFANWAIGSPVMDAGTDCVAMVNLTIVSK 117
Query: 517 GWRN 528
WRN
Sbjct: 118 TWRN 121
>SB_39193| Best HMM Match : Peptidase_A16_N (HMM E-Value=0.029)
Length = 1769
Score = 30.7 bits (66), Expect = 1.7
Identities = 17/43 (39%), Positives = 20/43 (46%)
Frame = +3
Query: 750 LKSSSGNFDAYYDQSSQDFTDTEKEIISEWAXNXEKIMHGTPS 878
LKS+ GNFDAY S + E + N I HG PS
Sbjct: 178 LKSNRGNFDAYMTLSRSSTAELEWWEKNNVLDNKNVISHGAPS 220
>SB_11898| Best HMM Match : DMP1 (HMM E-Value=1.6)
Length = 1705
Score = 30.7 bits (66), Expect = 1.7
Identities = 23/64 (35%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Frame = -1
Query: 766 PEELFNFNSCINAPARQTA-KDAELPVPAPMVSS-DPIEISIDFTGRYVLPKIPENTYRK 593
P + N N QTA KDAE V P+ S D + S DFT + +I + RK
Sbjct: 634 PSKEMNKNKNKGLKGDQTAAKDAEKEVDTPVYESQDMLTSSGDFTSAEIGVEIEPSKKRK 693
Query: 592 LRKE 581
++KE
Sbjct: 694 MKKE 697
>SB_17959| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 843
Score = 29.1 bits (62), Expect = 5.3
Identities = 23/60 (38%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
Frame = -1
Query: 346 VFTSFITMELLRPRLTAIAVFPYTTECSPCKMTFPGA-----ETLTVNKLSTAVNIVLLM 182
V T FIT+ELLR RL A F T S F G+ E V T +NI+L++
Sbjct: 79 VKTDFITIELLRGRLRYTANFGSTANISGFHEVFMGSHLADNEWHQVELRRTGLNILLIL 138
>SB_12979| Best HMM Match : GYF (HMM E-Value=8.6e-05)
Length = 341
Score = 28.7 bits (61), Expect = 7.0
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = +2
Query: 632 STGKVYGYFDGI*AHHW--RGYWQFGVFCRLSSR 727
S+ +VYG F I HW G++ GVF R SR
Sbjct: 285 SSSEVYGPFSSIDMLHWTNEGHFSDGVFVRKESR 318
>SB_5198| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1037
Score = 28.7 bits (61), Expect = 7.0
Identities = 31/132 (23%), Positives = 55/132 (41%), Gaps = 11/132 (8%)
Frame = +3
Query: 405 PLEPTVKSLFHPKLAPGITGKFSW-----RLPHKIDHDYHLRRVEEYLHLIKPNFD---S 560
P E S FH +A G K W + DH + ++Y +L N+ +
Sbjct: 242 PTEYLKASSFHLLIANGSDIKCIWSFGDGKADKMFDHAHGGSFKQDYQYLNPGNYSVVVT 301
Query: 561 LPNNQKNSLRSFLYVFSGIFGSTYL---PVKSMDISMGSELTIGAGTGSSASFAVCLAGA 731
N ++N R+ + + + PV+ + S E TIG TGS ++ +A
Sbjct: 302 CGNRKRNITRTTFAIVQEVISKLEIKPIPVQIYNQSFKIEWTIG--TGSQVTYTASIARK 359
Query: 732 LIQLLKLKSSSG 767
++++ + SSG
Sbjct: 360 GLEVITIDVSSG 371
>SB_58878| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 311
Score = 28.7 bits (61), Expect = 7.0
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = -3
Query: 869 SVHYLLTIXGPFRYNLLFGIRKILAALIVICI 774
+V+ L+ I PFRYN L ++L + ++C+
Sbjct: 136 AVNRLVEITNPFRYNALATKTRLLVIICLLCV 167
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,381,452
Number of Sequences: 59808
Number of extensions: 729748
Number of successful extensions: 2256
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1980
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2253
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2681370225
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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