Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_P12
         (925 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB209722-1|BAD92959.1|  421|Homo sapiens mevalonate kinase varia...   101   3e-21
M88468-1|AAB59362.1|  396|Homo sapiens mevalonate kinase protein.     101   5e-21
BC016140-1|AAH16140.1|  396|Homo sapiens MVK protein protein.         101   5e-21
AF217535-1|AAF82407.1|  396|Homo sapiens mevalonate kinase protein.   101   5e-21
AF217536-1|AAF82406.1|  113|Homo sapiens truncated mevalonate ki...    54   6e-07
AF060511-1|AAG43129.1|   86|Homo sapiens My016 protein protein.        36   0.21 

>AB209722-1|BAD92959.1|  421|Homo sapiens mevalonate kinase variant
           protein.
          Length = 421

 Score =  101 bits (243), Expect = 3e-21
 Identities = 79/229 (34%), Positives = 129/229 (56%), Gaps = 3/229 (1%)
 Frame = +3

Query: 231 VSAPGKVILHGEHSVVYGKTAIAVSLGLRSSIVIKEVNTPHEPA-VHIHLPCVDLQETIP 407
           VSAPGKVILHGEH+VV+GK A+AVSL LR+ + ++    PH    V ++LP + ++    
Sbjct: 33  VSAPGKVILHGEHAVVHGKVALAVSLNLRTFLRLQ----PHSNGKVDLNLPNIGIKRAWD 88

Query: 408 LEPTVKSLFHPKLAPG-ITGKFSWRLPHKIDHDYHLRRVEEYLHLIKPNFDSLPNNQKNS 584
           +   ++SL    L  G +T   S ++           +++E   L  P  D     ++ +
Sbjct: 89  VA-RLQSLDTSFLEQGDVTTPTSEQV----------EKLKEVAGL--P--DDCAVTERLA 133

Query: 585 LRSFLYVFSGIFGSTYLPVKSMDISMGSELTIGAGTGSSASFAVCLAGALIQLLK-LKSS 761
           + +FLY++  I       + S+DI + SEL  GAG GSSA+++VCLA AL+ + + + + 
Sbjct: 134 VLAFLYLYLSICRKQRA-LPSLDIVVWSELPPGAGLGSSAAYSVCLAAALLTVCEEIPNP 192

Query: 762 SGNFDAYYDQSSQDFTDTEKEIISEWAXNXEKIMHGTPSGIDNATCTFG 908
             + D     + +D      E+I++WA   E+++HG PSG+DNA  T+G
Sbjct: 193 LKDGDCVNRWTKEDL-----ELINKWAFQGERMIHGNPSGVDNAVSTWG 236


>M88468-1|AAB59362.1|  396|Homo sapiens mevalonate kinase protein.
          Length = 396

 Score =  101 bits (241), Expect = 5e-21
 Identities = 79/229 (34%), Positives = 128/229 (55%), Gaps = 3/229 (1%)
 Frame = +3

Query: 231 VSAPGKVILHGEHSVVYGKTAIAVSLGLRSSIVIKEVNTPHEPA-VHIHLPCVDLQETIP 407
           VSAPGKVILHGEH+VV+GK A+AVSL LR+ + ++    PH    V + LP + ++    
Sbjct: 8   VSAPGKVILHGEHAVVHGKVALAVSLNLRTFLRLQ----PHSNGKVDLSLPNIGIKRAWD 63

Query: 408 LEPTVKSLFHPKLAPG-ITGKFSWRLPHKIDHDYHLRRVEEYLHLIKPNFDSLPNNQKNS 584
           +   ++SL    L  G +T   S ++           +++E   L  P  D     ++ +
Sbjct: 64  VA-RLQSLDTSFLEQGDVTTPTSEQV----------EKLKEVAGL--P--DDCAVTERLA 108

Query: 585 LRSFLYVFSGIFGSTYLPVKSMDISMGSELTIGAGTGSSASFAVCLAGALIQLLK-LKSS 761
           + +FLY++  I       + S+DI + SEL  GAG GSSA+++VCLA AL+ + + + + 
Sbjct: 109 VLAFLYLYLSICRKQRA-LPSLDIVVWSELPPGAGLGSSAAYSVCLAAALLTVCEEIPNP 167

Query: 762 SGNFDAYYDQSSQDFTDTEKEIISEWAXNXEKIMHGTPSGIDNATCTFG 908
             + D     + +D      E+I++WA   E+++HG PSG+DNA  T+G
Sbjct: 168 LKDGDCVNRWTKEDL-----ELINKWAFQGERMIHGNPSGVDNAVSTWG 211


>BC016140-1|AAH16140.1|  396|Homo sapiens MVK protein protein.
          Length = 396

 Score =  101 bits (241), Expect = 5e-21
 Identities = 79/229 (34%), Positives = 128/229 (55%), Gaps = 3/229 (1%)
 Frame = +3

Query: 231 VSAPGKVILHGEHSVVYGKTAIAVSLGLRSSIVIKEVNTPHEPA-VHIHLPCVDLQETIP 407
           VSAPGKVILHGEH+VV+GK A+AVSL LR+ + ++    PH    V + LP + ++    
Sbjct: 8   VSAPGKVILHGEHAVVHGKVALAVSLNLRTFLRLQ----PHSNGKVDLSLPNIGIKRAWD 63

Query: 408 LEPTVKSLFHPKLAPG-ITGKFSWRLPHKIDHDYHLRRVEEYLHLIKPNFDSLPNNQKNS 584
           +   ++SL    L  G +T   S ++           +++E   L  P  D     ++ +
Sbjct: 64  VA-RLQSLDTSFLEQGDVTTPTSEQV----------EKLKEVAGL--P--DDCAVTERLA 108

Query: 585 LRSFLYVFSGIFGSTYLPVKSMDISMGSELTIGAGTGSSASFAVCLAGALIQLLK-LKSS 761
           + +FLY++  I       + S+DI + SEL  GAG GSSA+++VCLA AL+ + + + + 
Sbjct: 109 VLAFLYLYLSICRKQRA-LPSLDIVVWSELPPGAGLGSSAAYSVCLAAALLTVCEEIPNP 167

Query: 762 SGNFDAYYDQSSQDFTDTEKEIISEWAXNXEKIMHGTPSGIDNATCTFG 908
             + D     + +D      E+I++WA   E+++HG PSG+DNA  T+G
Sbjct: 168 LKDGDCVNRWTKEDL-----ELINKWAFQGERMIHGNPSGVDNAVSTWG 211


>AF217535-1|AAF82407.1|  396|Homo sapiens mevalonate kinase protein.
          Length = 396

 Score =  101 bits (241), Expect = 5e-21
 Identities = 79/229 (34%), Positives = 128/229 (55%), Gaps = 3/229 (1%)
 Frame = +3

Query: 231 VSAPGKVILHGEHSVVYGKTAIAVSLGLRSSIVIKEVNTPHEPA-VHIHLPCVDLQETIP 407
           VSAPGKVILHGEH+VV+GK A+AVSL LR+ + ++    PH    V + LP + ++    
Sbjct: 8   VSAPGKVILHGEHAVVHGKVALAVSLNLRTFLRLQ----PHSNGKVDLSLPNIGIKRAWD 63

Query: 408 LEPTVKSLFHPKLAPG-ITGKFSWRLPHKIDHDYHLRRVEEYLHLIKPNFDSLPNNQKNS 584
           +   ++SL    L  G +T   S ++           +++E   L  P  D     ++ +
Sbjct: 64  VA-RLQSLDTSFLEQGDVTTPTSEQV----------EKLKEVAGL--P--DDCAVTERLA 108

Query: 585 LRSFLYVFSGIFGSTYLPVKSMDISMGSELTIGAGTGSSASFAVCLAGALIQLLK-LKSS 761
           + +FLY++  I       + S+DI + SEL  GAG GSSA+++VCLA AL+ + + + + 
Sbjct: 109 VLAFLYLYLSICRKQRA-LPSLDIVVWSELPPGAGLGSSAAYSVCLAAALLTVCEEIPNP 167

Query: 762 SGNFDAYYDQSSQDFTDTEKEIISEWAXNXEKIMHGTPSGIDNATCTFG 908
             + D     + +D      E+I++WA   E+++HG PSG+DNA  T+G
Sbjct: 168 LKDGDCVNRWTKEDL-----ELINKWAFQGERMIHGNPSGVDNAVSTWG 211


>AF217536-1|AAF82406.1|  113|Homo sapiens truncated mevalonate
           kinase protein.
          Length = 113

 Score = 54.4 bits (125), Expect = 6e-07
 Identities = 29/56 (51%), Positives = 40/56 (71%), Gaps = 1/56 (1%)
 Frame = +3

Query: 231 VSAPGKVILHGEHSVVYGKTAIAVSLGLRSSIVIKEVNTPHEPA-VHIHLPCVDLQ 395
           VSAPGKVILHGEH+VV+GK A+AVSL LR+ + ++    PH    V + LP + ++
Sbjct: 4   VSAPGKVILHGEHAVVHGKVALAVSLNLRTFLRLQ----PHSNGKVDLSLPNIGIK 55


>AF060511-1|AAG43129.1|   86|Homo sapiens My016 protein protein.
          Length = 86

 Score = 35.9 bits (79), Expect = 0.21
 Identities = 16/21 (76%), Positives = 16/21 (76%)
 Frame = +2

Query: 8   LQEELKTIHAFTQKTLTVDQW 70
           L EEL  IHAF QKTLT DQW
Sbjct: 60  LAEELPHIHAFEQKTLTPDQW 80


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,859,897
Number of Sequences: 237096
Number of extensions: 3486347
Number of successful extensions: 7577
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7573
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 12047931574
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)