Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_F_P10
(786 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_5619| Best HMM Match : No HMM Matches (HMM E-Value=.) 200 1e-51
SB_12178| Best HMM Match : TIM (HMM E-Value=0) 178 5e-45
SB_2385| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 1e-04
SB_41634| Best HMM Match : DUF1518 (HMM E-Value=5.9) 31 1.4
SB_39600| Best HMM Match : Sushi (HMM E-Value=0) 30 2.4
SB_44183| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.3
SB_54138| Best HMM Match : rve (HMM E-Value=6.8e-24) 29 5.6
SB_56497| Best HMM Match : Extensin_2 (HMM E-Value=0.16) 29 5.6
SB_16761| Best HMM Match : PDZ (HMM E-Value=1.6e-08) 28 7.5
SB_25405| Best HMM Match : DUF343 (HMM E-Value=0.076) 28 7.5
SB_52498| Best HMM Match : Chromate_transp (HMM E-Value=0.17) 28 9.9
>SB_5619| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 399
Score = 200 bits (488), Expect = 1e-51
Identities = 108/199 (54%), Positives = 134/199 (67%)
Frame = +2
Query: 188 VIVGVPAIYLSYVKTIIPDNVEVAAQNCWKSPKGAFTGEISPAMIKDVGVNWVILGHSER 367
++V PA+YLSYV+ N+ VAAQNC+K GA ++W
Sbjct: 218 IVVSPPALYLSYVRKAAKQNIGVAAQNCYKVASGA--------------LHW-------- 255
Query: 368 RTIFGEKDELVAEKVAHALESGLKVIACIGETLEERESGKTEEVVFRQLKALVSAIGDKW 547
G+ +L+ EKVAHAL + +KVIACIGE L ERE+GKT+EVVFRQ+KA+ I D W
Sbjct: 256 ----GD--QLIGEKVAHALSANVKVIACIGELLSEREAGKTQEVVFRQIKAIADKISD-W 308
Query: 548 ENIVLAYEPVWAIGTGKTATPQQAQDVHHALRNWLSANVSGSVSDAVRIQYGGSVTAANA 727
+V+AYEPVWAIGTGKTATPQQAQ+VH+ LR WL NVS V+++ RI YGGSV A N
Sbjct: 309 SKVVIAYEPVWAIGTGKTATPQQAQEVHNQLRAWLKENVSVDVAESTRIIYGGSVNAKNC 368
Query: 728 KELASCKDIDGFLXGGASL 784
+ELA+ DIDGFL GGASL
Sbjct: 369 RELAAEGDIDGFLVGGASL 387
>SB_12178| Best HMM Match : TIM (HMM E-Value=0)
Length = 203
Score = 178 bits (433), Expect = 5e-45
Identities = 85/182 (46%), Positives = 124/182 (68%), Gaps = 1/182 (0%)
Frame = +2
Query: 242 DNVEVAAQNCWKSPKGAFTGEISPAMIKDVGVNWVILGHSERRTIFGEKDELVAEKVAHA 421
D++ AQNC + GA+TGE+S AM+ +GVN+VI+GHSERR F E +E +A+KV A
Sbjct: 7 DHISTGAQNCHEKASGAYTGEVSAAMLAHLGVNYVIIGHSERREYFNESNEQLAQKVDAA 66
Query: 422 LESGLKVIACIGETLEERESGKTEEVVFRQLK-ALVSAIGDKWENIVLAYEPVWAIGTGK 598
L + L+VI C GE+LE R++ V +Q+K +L ++ +N+V+AYEP+WAIGTG+
Sbjct: 67 LVNNLQVIFCCGESLEIRDADGQNNFVEQQIKESLFHLSEEQMKNVVVAYEPIWAIGTGR 126
Query: 599 TATPQQAQDVHHALRNWLSANVSGSVSDAVRIQYGGSVTAANAKELASCKDIDGFLXGGA 778
TA+ +QAQD+H +R+ L++ ++D I YGGS NA EL +C D+DG L GGA
Sbjct: 127 TASSEQAQDIHAHIRSVLASKYGDDLADDTTILYGGSCKPGNADELFACPDVDGGLIGGA 186
Query: 779 SL 784
+L
Sbjct: 187 AL 188
>SB_2385| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 122
Score = 44.0 bits (99), Expect = 1e-04
Identities = 18/36 (50%), Positives = 24/36 (66%)
Frame = +2
Query: 77 MGRKFVVGGNWKMNGDKNQINEIVNNLKKGPLDPNV 184
MGR+F VGGNWK+NG + I E++ K LD +V
Sbjct: 1 MGRRFFVGGNWKLNGSRASIQELLEAWGKADLDKSV 36
Score = 40.7 bits (91), Expect = 0.001
Identities = 16/42 (38%), Positives = 26/42 (61%)
Frame = +2
Query: 179 NVEVIVGVPAIYLSYVKTIIPDNVEVAAQNCWKSPKGAFTGE 304
+ EV++ PA+Y +++ +P +A QN +K GAFTGE
Sbjct: 79 DTEVVISPPAVYADFLRANMPAEFGLALQNVYKEGSGAFTGE 120
>SB_41634| Best HMM Match : DUF1518 (HMM E-Value=5.9)
Length = 321
Score = 30.7 bits (66), Expect = 1.4
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = -3
Query: 772 TX*ETINVFAGCKLLSISSCDRATVLNTYSVRYTPTHIGRQPVTKSMV 629
T T +F K+ S C+R T+ +S Y+P +G++ V S V
Sbjct: 47 TAPNTTTIFLS-KIFSAKKCNRGTLSKNWSGPYSPDRVGKRRVPNSRV 93
>SB_39600| Best HMM Match : Sushi (HMM E-Value=0)
Length = 1368
Score = 29.9 bits (64), Expect = 2.4
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +1
Query: 601 CYSPTGSRCPPCSS*LVVGQCEWECI 678
C+ P+GS CPP L GQC + C+
Sbjct: 283 CF-PSGSDCPPNHKCLCDGQCGYSCV 307
>SB_44183| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 751
Score = 29.1 bits (62), Expect = 4.3
Identities = 17/57 (29%), Positives = 25/57 (43%)
Frame = -1
Query: 345 TQFTPTSLIIAGEISPVKAPFGDFQQFWAATSTLSGMIVFT*DR*IAGTPTITSTLG 175
T T +II G + + PF W T+T+ + +F + GTP TS G
Sbjct: 254 TWLTYIIMIILGHLVILSVPFFATSTAWTLTNTMHNLCMFLLLHYVKGTPFETSDQG 310
>SB_54138| Best HMM Match : rve (HMM E-Value=6.8e-24)
Length = 2160
Score = 28.7 bits (61), Expect = 5.6
Identities = 28/108 (25%), Positives = 48/108 (44%)
Frame = -2
Query: 503 KQLPQSCQILSLRESHQYRQ*LSSQIQGHEQPFQQQVHLFHQKLFFFQNDQV*PNLLQRL 324
+QL Q Q+ RE Q +Q Q ++ QQQ HL Q+ Q + + Q+
Sbjct: 1533 QQLQQQ-QLQRQRELQQQQQQQQQQQLQRQRELQQQQHLQQQRQLQQQQQYIEQKIRQQQ 1591
Query: 323 *S*RVKFHQ*KLLLETSNSSGLQLRHYQE**SSHKTGK*QEHQQLPQH 180
+ + +Q + + QL+H Q+ + + Q+ Q+LPQH
Sbjct: 1592 LAHQQYTNQQQQQILYQQQQ--QLQHQQQQQQLQQQQQLQQQQRLPQH 1637
>SB_56497| Best HMM Match : Extensin_2 (HMM E-Value=0.16)
Length = 814
Score = 28.7 bits (61), Expect = 5.6
Identities = 28/108 (25%), Positives = 48/108 (44%)
Frame = -2
Query: 503 KQLPQSCQILSLRESHQYRQ*LSSQIQGHEQPFQQQVHLFHQKLFFFQNDQV*PNLLQRL 324
+QL Q Q+ RE Q +Q Q ++ QQQ HL Q+ Q + + Q+
Sbjct: 187 QQLQQQ-QLQRQRELQQQQQQQQQQQLQRQRELQQQQHLQQQRQLQQQQQYIEQKIRQQQ 245
Query: 323 *S*RVKFHQ*KLLLETSNSSGLQLRHYQE**SSHKTGK*QEHQQLPQH 180
+ + +Q + + QL+H Q+ + + Q+ Q+LPQH
Sbjct: 246 LAHQQYTNQQQQQILYQQQQ--QLQHQQQQQQLQQQQQLQQQQRLPQH 291
>SB_16761| Best HMM Match : PDZ (HMM E-Value=1.6e-08)
Length = 889
Score = 28.3 bits (60), Expect = 7.5
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = +2
Query: 293 FTGEISPAMIKDVGVNWVILGHSERRTIFGEKD-ELVAEKVAHALESGLKVIACIGETLE 469
+ E+S A+ D IL E++ I + + E+ E++AH +E +V+A LE
Sbjct: 116 YARELSEALAGDDHSKQNILNELEKKLISAQTEKEIALEELAHVIEQRDQVVAERDRALE 175
Query: 470 E 472
E
Sbjct: 176 E 176
>SB_25405| Best HMM Match : DUF343 (HMM E-Value=0.076)
Length = 178
Score = 28.3 bits (60), Expect = 7.5
Identities = 10/42 (23%), Positives = 20/42 (47%)
Frame = +2
Query: 575 VWAIGTGKTATPQQAQDVHHALRNWLSANVSGSVSDAVRIQY 700
VW G+ +T D + +R W +A + +SD + + +
Sbjct: 110 VWMAGSRRTGCENDNVDTNQVMRFWYNAETNELISDEIGVAF 151
>SB_52498| Best HMM Match : Chromate_transp (HMM E-Value=0.17)
Length = 655
Score = 27.9 bits (59), Expect = 9.9
Identities = 19/66 (28%), Positives = 27/66 (40%)
Frame = -3
Query: 511 LSKNNFLSLARFSLFESLTNTGNDFQARFKGMSNLFSNKFIFFTKNCSSFRMTKYNPIYS 332
LS+ +SL + F + T G A + LF F F+ +C KY +
Sbjct: 429 LSEIICISLVLLTKFIAYTLMGLVLSAEYYSHVLLFIFTFAFYVWHCFCSVTAKYQQLLK 488
Query: 331 NVFDHS 314
FDHS
Sbjct: 489 LTFDHS 494
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,309,391
Number of Sequences: 59808
Number of extensions: 539361
Number of successful extensions: 1399
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1307
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1394
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2155861620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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