Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_P02
         (901 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    28   2.1  
SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr 3...    27   2.7  
SPBC19C2.06c |mug124||sequence orphan|Schizosaccharomyces pombe|...    27   3.6  
SPCC736.14 |dis1||microtubule-associated protein Dis1 |Schizosac...    27   4.8  
SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomy...    26   8.4  
SPAC1952.17c ||SPAC890.01c|GTPase activating protein|Schizosacch...    26   8.4  

>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = -2

Query: 654 AAVTGLGQIPPNLPQTIRHTSSESKKADVEL 562
           AA  G   +PPN P+++RH  S +++  +++
Sbjct: 310 AAQQGANVLPPNAPESVRHLISLNEETWIQI 340


>SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 378

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +2

Query: 461 DEITPQIYEPSWMYKCVPDEGCQRSEHPRPTLSDNSTSA 577
           D++   IYE S   + V  E     EHP+PT + ++ SA
Sbjct: 264 DKVAAWIYEHSKPSETVKSEQETAVEHPKPTATTSAPSA 302


>SPBC19C2.06c |mug124||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 145

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 10/35 (28%), Positives = 25/35 (71%)
 Frame = +3

Query: 501 ISACRMKDVSVVNILGRHCPTTQRQLSSIRLTCAV 605
           +++C+  ++S++ I+G HCP  +R ++S+ +  A+
Sbjct: 49  LTSCQA-NISLLKIVGLHCPFHRRGIASLSVCVAL 82


>SPCC736.14 |dis1||microtubule-associated protein Dis1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 882

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 18/63 (28%), Positives = 28/63 (44%)
 Frame = -2

Query: 792 CPPHSANKLLLITCVISTNSSLVSAGTLSRSYLK*LGWIFTVCELSAAVTGLGQIPPNLP 613
           CPP ++ + L   CV   N +       + + L  L  IF+   LS  + GL   P  LP
Sbjct: 466 CPPRASLETLCSLCVTLINDTFEPVRMATTNVLATLVQIFSQPVLSKYIVGLD--PKKLP 523

Query: 612 QTI 604
           + +
Sbjct: 524 KIL 526


>SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1010

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 19/80 (23%), Positives = 40/80 (50%), Gaps = 5/80 (6%)
 Frame = +2

Query: 557 SDNSTSAFFDSLDVCRIVCGRFGGIWPKPVTAALSSQTVKIH-PNYLRYDLLNVPAET-- 727
           S   ++ F+D  ++   +C  F  IW +P       Q  K + P ++++  L +   T  
Sbjct: 681 STGQSTQFYDKFNIRFYICEVFRTIWKQPAYFGKLEQEQKTNLPFFVKFVALMLNDATYL 740

Query: 728 -RELLVEMTQVIS-NNLLAE 781
             E L+++T++ +  +LLA+
Sbjct: 741 LDEALLKLTEIHNLQSLLAD 760


>SPAC1952.17c ||SPAC890.01c|GTPase activating
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 619

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 12/51 (23%), Positives = 21/51 (41%)
 Frame = +2

Query: 434 VLCNVESTFDEITPQIYEPSWMYKCVPDEGCQRSEHPRPTLSDNSTSAFFD 586
           VL     T+     ++    W    + +E  + S+HP  T  D+    +FD
Sbjct: 61  VLEKHRKTYTSFVQELLIDPWRKLTLHEESGENSDHPLNTSDDSKWKEYFD 111


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,282,243
Number of Sequences: 5004
Number of extensions: 62718
Number of successful extensions: 151
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)