Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_P02
         (901 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0022 + 3065644-3065953,3066048-3067162,3067261-3067437,306...    29   3.8  
02_05_0968 + 33156585-33156941,33158510-33159902,33160035-331601...    29   6.7  
02_01_0419 - 3071796-3072502,3073198-3073432                           29   6.7  

>09_02_0022 +
           3065644-3065953,3066048-3067162,3067261-3067437,
           3067535-3067648,3068614-3068718,3068930-3069064,
           3069148-3069203,3069277-3069382,3069515-3069631,
           3069705-3069831,3069915-3070141,3070164-3070727
          Length = 1050

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 557 SDNSTSAFFDSLDVCRIVCGRFGGIW 634
           S+N   + FDS  + R+  G+FGG W
Sbjct: 641 SENGELSSFDSKGILRVFSGQFGGSW 666


>02_05_0968 +
           33156585-33156941,33158510-33159902,33160035-33160118,
           33160216-33160265
          Length = 627

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
 Frame = +2

Query: 509 VPDEGCQRS---EHPRPTLSDNSTSAFFDSLDVCRIVCGRFGGIWPKP-VTAALSSQTVK 676
           +PD G +R+   E P P  S+  T+A   S  V R+  G      PKP V +   S T K
Sbjct: 160 LPDAGARRALSQEPPPPPTSERPTTAGAGSHRVARVTGGGATTTAPKPRVFSGHRSSTAK 219

Query: 677 IH 682
            H
Sbjct: 220 EH 221


>02_01_0419 - 3071796-3072502,3073198-3073432
          Length = 313

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = +2

Query: 623 GGIWPKPVT-AALSSQTVKIHPNYLRYDLLNVPAETRELLVEMTQVISNNLL 775
           GG+  +P   + LS QT     N+L   +L VP  TR+L  ++ ++I    L
Sbjct: 26  GGVVKRPRDHSVLSEQTTDF--NHLNVKILPVPVHTRQLAEQVNKIIQRQKL 75


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,637,779
Number of Sequences: 37544
Number of extensions: 408099
Number of successful extensions: 864
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 844
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 864
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2542098580
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)