Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_P02
         (901 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        23   3.8  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        23   3.8  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        23   3.8  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   5.0  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    22   6.6  
EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor 1-a...    22   6.6  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    22   8.8  

>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -3

Query: 212 ILICTQDVFVVPSPPVLCDN 153
           I++  +    VP+PPVL +N
Sbjct: 345 IMLLNEKTLAVPAPPVLPEN 364


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -3

Query: 212 ILICTQDVFVVPSPPVLCDN 153
           I++  +    VP+PPVL +N
Sbjct: 345 IMLLNEKTLAVPAPPVLPEN 364


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -3

Query: 212 ILICTQDVFVVPSPPVLCDN 153
           I++  +    VP+PPVL +N
Sbjct: 345 IMLLNEKTLAVPAPPVLPEN 364


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 11/44 (25%), Positives = 22/44 (50%)
 Frame = -2

Query: 687 LGWIFTVCELSAAVTGLGQIPPNLPQTIRHTSSESKKADVELSD 556
           L W+  +  ++   +     P  LP+ +  + ++SK   +ELSD
Sbjct: 356 LRWMMEIPNVTLPTSTYSGSPTELPKHLPTSLTKSKMEVMELSD 399


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 10/26 (38%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = -3

Query: 107 SITEHRPGNNIAFLIKRART-GVRRG 33
           ++TE  PG+N+ F +K      +RRG
Sbjct: 298 ALTEALPGDNVGFNVKNISVKELRRG 323


>EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor
           1-alpha protein.
          Length = 119

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 10/26 (38%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = -3

Query: 107 SITEHRPGNNIAFLIKRART-GVRRG 33
           ++TE  PG+N+ F +K      +RRG
Sbjct: 9   ALTEALPGDNVGFNVKNISVKELRRG 34


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 9/28 (32%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
 Frame = +3

Query: 234 LKRQKPAVSEKIRR-IIYFYDDYLKFSH 314
           +++++    EK++R +I  Y+ Y+K+SH
Sbjct: 45  VQQEREQEYEKLKRKMILEYELYIKYSH 72


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 223,321
Number of Sequences: 438
Number of extensions: 4381
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29146299
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)