Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_O24
         (897 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067211-3|ABC71845.1|  720|Caenorhabditis elegans Hypothetical ...    29   4.5  
AF067211-2|AAC16990.3|  745|Caenorhabditis elegans Hypothetical ...    29   4.5  
U53155-8|AAC48263.1|  284|Caenorhabditis elegans Hypothetical pr...    28   7.9  

>AF067211-3|ABC71845.1|  720|Caenorhabditis elegans Hypothetical
           protein B0205.1b protein.
          Length = 720

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 15/51 (29%), Positives = 26/51 (50%)
 Frame = +2

Query: 92  KLIHNIEHVSVSKLFFEDFFQL*STIVFTLQAITFYTSEAAVCPCNNWNRW 244
           K  H++E +  + L F++F +  S I+  +  + FY   A     N WNR+
Sbjct: 245 KTRHSVEPMQATNLIFKEFSERPSRILDKMYQLRFYQKLAP--NMNEWNRY 293


>AF067211-2|AAC16990.3|  745|Caenorhabditis elegans Hypothetical
           protein B0205.1a protein.
          Length = 745

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 15/51 (29%), Positives = 26/51 (50%)
 Frame = +2

Query: 92  KLIHNIEHVSVSKLFFEDFFQL*STIVFTLQAITFYTSEAAVCPCNNWNRW 244
           K  H++E +  + L F++F +  S I+  +  + FY   A     N WNR+
Sbjct: 270 KTRHSVEPMQATNLIFKEFSERPSRILDKMYQLRFYQKLAP--NMNEWNRY 318


>U53155-8|AAC48263.1|  284|Caenorhabditis elegans Hypothetical
           protein ZC513.1 protein.
          Length = 284

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
 Frame = -1

Query: 747 HILNFLVYSLY--NKLPLSTPHSI*ETLSYLFVSFVLSQRPCTSHQTF 610
           H+LN ++Y  Y  N+L L    S    L     SFV +Q P   HQT+
Sbjct: 62  HLLNSMLYQAYQDNRLALKIDES---NLPNEMKSFVSTQCPTKKHQTY 106


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,938,308
Number of Sequences: 27780
Number of extensions: 461514
Number of successful extensions: 1304
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1246
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1304
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2276333906
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)