Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_O15
         (426 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0088 + 684471-685154,685271-685834,685938-686222                 28   2.7  
03_01_0057 + 476172-476283,476337-476449,476532-476634,477089-47...    28   3.6  
05_05_0393 - 24632570-24632629,24633212-24633370,24633496-246336...    27   6.3  

>07_01_0088 + 684471-685154,685271-685834,685938-686222
          Length = 510

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = +1

Query: 49  HPDWGGKRAAIAGTVSCRNDESLASIYKLIQNEAEKLLLCQK 174
           + DW  KR  I  T+S R+D+ + +    + ++++ + LC K
Sbjct: 431 YEDW--KREMIVSTISRRDDDDMETFRDRVDDDSDHVRLCLK 470


>03_01_0057 +
           476172-476283,476337-476449,476532-476634,477089-477210,
           477303-477497,477627-477701,478082-478179,478328-478421
          Length = 303

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = +2

Query: 104 TMNPWRLFINLFRMKLKNSCYARSLKPTPPKQKHRQN 214
           TM  W++FI  F +   + C+ + +K +   + H +N
Sbjct: 250 TMKHWQVFILFFELFTASVCFGKRIKHSSISEGHDEN 286


>05_05_0393 -
           24632570-24632629,24633212-24633370,24633496-24633612,
           24633697-24633831,24634140-24634337,24634449-24634529,
           24634845-24635141,24635231-24636013,24636589-24636765
          Length = 668

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -2

Query: 116 KDSSFLQDTVPAMAALFPPQSGCESEL 36
           KD  F Q+T   +AAL  PQSG   +L
Sbjct: 211 KDILFAQETAENIAALLTPQSGAYYDL 237


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,851,066
Number of Sequences: 37544
Number of extensions: 167258
Number of successful extensions: 442
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 436
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 442
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 790518168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)