Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_O15
         (426 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    25   0.35 
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    25   0.35 
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   1.9  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    23   1.9  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   7.6  

>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 25.0 bits (52), Expect = 0.35
 Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = +2

Query: 26  GRSPTHFHIQTGVERGLPSPALCPAGTMN-PW 118
           G S    H+ + V RGL    +  +GT+N PW
Sbjct: 255 GGSSVSLHLISPVTRGLVRRGILQSGTLNAPW 286


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 25.0 bits (52), Expect = 0.35
 Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = +2

Query: 26  GRSPTHFHIQTGVERGLPSPALCPAGTMN-PW 118
           G S    H+ + V RGL    +  +GT+N PW
Sbjct: 255 GGSSVSLHLISPVTRGLVRRGILQSGTLNAPW 286


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.6 bits (46), Expect = 1.9
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +3

Query: 177 LSRHHRNRNTDKMPFNHYIIFS*SLKCI 260
           L+ HHRN +T +M     ++F   L CI
Sbjct: 316 LNYHHRNADTHEMSEWVKVVFLYWLPCI 343


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 22.6 bits (46), Expect = 1.9
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +3

Query: 153 KTPAMPEALSRHHRNRNTDK 212
           KT A+P  L+RH+R    +K
Sbjct: 99  KTFAVPARLTRHYRTHTGEK 118


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 20.6 bits (41), Expect = 7.6
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +2

Query: 131 NLFRMKLKNSCYARS 175
           N++++ LKN  Y RS
Sbjct: 674 NMYKLDLKNMKYTRS 688


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 91,563
Number of Sequences: 438
Number of extensions: 1813
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10997463
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)