Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_O14
         (893 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC12C2.12c |glo1|SPBC21D10.03c|glyoxalase I |Schizosaccharomyc...    32   0.13 
SPAC20G4.05c |||UPF0061 family protein|Schizosaccharomyces pombe...    27   2.7  
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p...    27   4.8  
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    26   6.3  

>SPBC12C2.12c |glo1|SPBC21D10.03c|glyoxalase I |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 302

 Score = 31.9 bits (69), Expect = 0.13
 Identities = 21/74 (28%), Positives = 33/74 (44%)
 Frame = +1

Query: 187 HFVFKVADRTLTAKFYREILGMKVLRHEEFSEGCEAACNGPYANRWSKTMVGYGPEDTHF 366
           H + +V D   + KFY E+ GMK++    F E  E + +    +       G        
Sbjct: 14  HTMIRVKDLDKSLKFYTEVFGMKLIDQWVFEEN-EFSLSFLAFDGPGALNHGVERSKREG 72

Query: 367 VVELTYNYGVTHYE 408
           ++ELTYN+G    E
Sbjct: 73  ILELTYNFGTEKKE 86


>SPAC20G4.05c |||UPF0061 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 568

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = +1

Query: 610 AKSIAYWNGLLTLKLYEKTDKTALLGYSDDQAKLELVDIGGP 735
           AK++A W     +     TD T++LG S D      +D+  P
Sbjct: 268 AKTVAKWQAYGFMNGVLNTDNTSILGLSIDYGPFGFLDVYNP 309


>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 932

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +2

Query: 44  RYKFIIIHRLNNHTKYI 94
           RYK  I+H LNN  KY+
Sbjct: 589 RYKTNIVHSLNNEQKYV 605


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +1

Query: 598  SSNLAKSIAYWNGLL-TLKLYEKTDKTALLGYS 693
            S  + KSI YW  LL   K Y+K D  +LL Y+
Sbjct: 1414 SDKIIKSITYWQSLLFNSKTYQK-DLFSLLWYA 1445


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,522,314
Number of Sequences: 5004
Number of extensions: 70025
Number of successful extensions: 180
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)