Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_O14
         (893 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    24   2.2  
DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex det...    23   3.8  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    23   5.0  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          22   6.6  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   6.6  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   6.6  
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    22   8.7  

>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = -3

Query: 588 NFHNGIFINWLGLVYNIEFVTTRSLNILQTIMFFNWPVVSLRP 460
           N++N    N+  L YNI ++    + +   I   N+P  S+ P
Sbjct: 339 NYNNNYNNNYKKLYYNINYIEQIPVPVPVPIYCGNFPPRSMEP 381


>DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = -3

Query: 588 NFHNGIFINWLGLVYNIEFVTTRSLNILQTIMFFNWPVVSLRP 460
           N++N  + N+  L YNI ++    + I   I   N+P   + P
Sbjct: 95  NYNNNNYNNYKKLYYNINYIEQVPVPIPVPIYCGNFPPRPMGP 137


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 11/43 (25%), Positives = 21/43 (48%)
 Frame = -3

Query: 588 NFHNGIFINWLGLVYNIEFVTTRSLNILQTIMFFNWPVVSLRP 460
           N++N  + N+  L YNI ++    + +   I   N+P   + P
Sbjct: 105 NYNNNNYNNYKKLYYNINYIEQIPVPVPVPIYCGNFPPRPMGP 147


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 12/33 (36%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
 Frame = +1

Query: 331 TMVGYGPEDTHFVVELTYNYGVTHY-EQGNDFL 426
           T+V  GPE        TY Y  + Y  QG+  L
Sbjct: 242 TIVNNGPEAAKMAKAFTYTYNYSMYWGQGHAIL 274


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 8/28 (28%), Positives = 16/28 (57%)
 Frame = -1

Query: 497 LCSLIGQLLVCALFRLSLDCTVMPRKSF 414
           L  L+G ++  ++F+  +   + PR SF
Sbjct: 191 LLMLVGMVMYISVFKAEVGSKLRPRSSF 218


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +3

Query: 741 PRKGIRAHSILVSIRRAAGH 800
           P KGI  H++   + +A GH
Sbjct: 626 PVKGIYQHNVASGLTKARGH 645


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = +2

Query: 83  TKYIHSLSLH 112
           TKY HSL LH
Sbjct: 54  TKYCHSLKLH 63


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 237,484
Number of Sequences: 438
Number of extensions: 5281
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28904421
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)