Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_F_O12
(839 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0075 + 3916373-3916400,3916760-3916858,3916943-3917116,391... 186 3e-47
01_01_0071 + 548255-548399,548478-548651,548787-548892,548992-54... 178 4e-45
02_05_1230 - 35099942-35100018,35100138-35100221,35100367-351004... 76 3e-14
10_08_0258 + 16261454-16261540,16261636-16261712,16262734-162628... 75 7e-14
05_06_0264 + 26756337-26756411,26756494-26756594,26757196-267573... 32 0.49
08_02_1342 - 26268552-26268783,26270213-26271137,26271680-26272907 30 2.6
04_04_1593 - 34661670-34661798,34661882-34661989,34662129-346623... 30 2.6
02_01_0725 - 5422477-5422641,5422721-5422792,5422876-5422958,542... 30 2.6
04_04_0792 - 28091597-28091675,28091853-28091908,28092151-280922... 29 6.1
12_02_0279 - 16704284-16704925 28 8.1
03_06_0064 + 31395168-31395223,31396906-31397368,31397440-313975... 28 8.1
>09_02_0075 +
3916373-3916400,3916760-3916858,3916943-3917116,
3917207-3917312,3917671-3917809,3918457-3918534,
3918863-3918928,3919213-3919298,3919939-3920038,
3920245-3920355,3920457-3920498,3920671-3920757,
3921013-3921102
Length = 401
Score = 186 bits (452), Expect = 3e-47
Identities = 95/216 (43%), Positives = 127/216 (58%), Gaps = 2/216 (0%)
Frame = +2
Query: 104 STKVSLNEVVIASAVXTPMXXXXXXXXXXXXXXXXXXXVNAAIERAGIPKEEIKEVYIGN 283
S + +V + TPM + AA++RA + ++EV+ GN
Sbjct: 3 SDNIGSRDVCVVGVARTPMGGFLGALSSLSATKLGSIAIEAALKRANVDPALVQEVFFGN 62
Query: 284 VCSANLGQAPARQAVIFAGLPKSTICTTVNKVCASGMKSIMLAAQGLQTGAQDIILAGGM 463
V SANLGQAPARQA + AG+P + +C+ VNKVCASGMK+ M AAQ + G DI++AGGM
Sbjct: 63 VLSANLGQAPARQAALGAGIPNTVVCSAVNKVCASGMKATMFAAQSILLGINDIVVAGGM 122
Query: 464 ESMSNVPFYL--KRGETSYGGMQLVDGIVFDGLTDVYNKFHMGNCAENTAKKLQITXQDQ 637
ESMSN P Y+ R + +G LVDG++ DGL DVY F MGNCAE A +T +DQ
Sbjct: 123 ESMSNAPKYIAEARKGSRFGHDTLVDGMLKDGLWDVYGDFAMGNCAELCADNHALTREDQ 182
Query: 638 XEYAVNSHKTSAAAYEAKAXVDELVPVPVPQKRGAP 745
YA+ S++ AA + A E+VP+ VP RG P
Sbjct: 183 DAYAIQSNERGIAARNSGAFAWEIVPIEVPVGRGKP 218
>01_01_0071 +
548255-548399,548478-548651,548787-548892,548992-549130,
549216-549293,549395-549460,550061-550201,550417-550527,
550614-550655,550739-550825,551033-551118,551681-551684
Length = 392
Score = 178 bits (434), Expect = 4e-45
Identities = 92/209 (44%), Positives = 128/209 (61%), Gaps = 2/209 (0%)
Frame = +2
Query: 125 EVVIASAVXTPMXXXXXXXXXXXXXXXXXXXVNAAIERAGIPKEEIKEVYIGNVCSANLG 304
+V I TP+ + AA+ RA + ++EV++GNV SANLG
Sbjct: 16 DVCIVGVARTPIGALLGSLSSLPATKLGSVAIQAALRRANVEPALVQEVFMGNVLSANLG 75
Query: 305 QAPARQAVIFAGLPKSTICTTVNKVCASGMKSIMLAAQGLQTGAQDIILAGGMESMSNVP 484
QAPARQA + AGLP + CTTVNKVC+SGMK++MLAAQ +Q G D+++AGGMESMSN P
Sbjct: 76 QAPARQAALGAGLPDTVPCTTVNKVCSSGMKAVMLAAQTIQLGMHDVVVAGGMESMSNAP 135
Query: 485 FYL--KRGETSYGGMQLVDGIVFDGLTDVYNKFHMGNCAENTAKKLQITXQDQXEYAVNS 658
Y+ R + +G L+DG++ DGL DVYN F MG CAE A + I+ ++Q YA+ S
Sbjct: 136 KYVAAARRGSRFGHDVLIDGMLKDGLWDVYNDFPMGMCAELCADQHSISREEQDLYAIQS 195
Query: 659 HKTSAAAYEAKAXVDELVPVPVPQKRGAP 745
++ + AA ++ E+ PV + RG P
Sbjct: 196 NERAIAARDSGTFSWEIAPVEISSGRGKP 224
>02_05_1230 -
35099942-35100018,35100138-35100221,35100367-35100475,
35100564-35100687,35101157-35101253,35101375-35101507,
35101654-35101731,35101821-35101928,35102011-35102078,
35102181-35102279,35102379-35102505,35102623-35102707,
35103297-35103373,35103482-35103562
Length = 448
Score = 76.2 bits (179), Expect = 3e-14
Identities = 56/203 (27%), Positives = 93/203 (45%), Gaps = 3/203 (1%)
Frame = +2
Query: 122 NEVVIASAVXTPMXXXXXXXXXXXXXXXXXXXV-NAAIERAGIPKEEIKEVYIGNVCSAN 298
++VV+ +A TP+ V A ++ I EI ++ +G V
Sbjct: 47 DDVVVVAAYRTPICKAKRGGFKDTYPEDLLTVVLKAVLDNTKINPGEIGDIVVGTVLGPG 106
Query: 299 LGQA-PARQAVIFAGLPKSTICTTVNKVCASGMKSIMLAAQGLQTGAQDIILAGGMESMS 475
+A R A +AG+P++ TVN+ C+SG++++ A ++ G DI + G+ESMS
Sbjct: 107 SQRAIECRAAAFYAGVPENVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMS 166
Query: 476 -NVPFYLKRGETSYGGMQLVDGIVFDGLTDVYNKFHMGNCAENTAKKLQITXQDQXEYAV 652
N + + +Q + MG +EN A + +T Q+Q + A
Sbjct: 167 VNAMGWEGQVNPKVNEVQKAQDCLLP----------MGITSENVAHRYGVTRQEQDQAAA 216
Query: 653 NSHKTSAAAYEAKAXVDELVPVP 721
SH+ +AAA A DE+VPVP
Sbjct: 217 ESHRRAAAATAAGKFKDEIVPVP 239
>10_08_0258 +
16261454-16261540,16261636-16261712,16262734-16262818,
16262931-16263057,16263147-16263245,16263343-16263410,
16263514-16263621,16263727-16263804,16263921-16264053,
16264138-16264234,16264465-16264588,16264668-16264776,
16264899-16264982,16265071-16265180
Length = 461
Score = 74.9 bits (176), Expect = 7e-14
Identities = 49/166 (29%), Positives = 82/166 (49%), Gaps = 1/166 (0%)
Frame = +2
Query: 224 AAIERAGIPKEEIKEVYIGNVCSANLGQA-PARQAVIFAGLPKSTICTTVNKVCASGMKS 400
A I++ + E+ ++ +G V + +A R A +AG P + TVN+ C+SG+++
Sbjct: 84 ALIDKTKLNPSEVGDIVVGTVLAPGSQRAIECRMAAFYAGFPDTVPLMTVNRQCSSGLQA 143
Query: 401 IMLAAQGLQTGAQDIILAGGMESMSNVPFYLKRGETSYGGMQLVDGIVFDGLTDVYNKFH 580
+ A ++ G DI +A G+ESM+ + G +F D
Sbjct: 144 VANVASNIKAGLYDIGIAAGLESMT-------VNQVRLDGQVNPKVELFSQARDCL--LP 194
Query: 581 MGNCAENTAKKLQITXQDQXEYAVNSHKTSAAAYEAKAXVDELVPV 718
MG +EN AK+ IT +Q + AV SH+ +AAA + +E+VPV
Sbjct: 195 MGLTSENVAKRFGITRMEQDQAAVESHRKAAAAAASGKFKEEIVPV 240
>05_06_0264 +
26756337-26756411,26756494-26756594,26757196-26757369,
26757449-26757548,26757869-26758006,26758104-26758185,
26758631-26758680,26758748-26758873
Length = 281
Score = 32.3 bits (70), Expect = 0.49
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +3
Query: 723 FHRKEGLPVIFAEDEEYKRVNFEKFTKLSTVFQKENG 833
FHRKE L V +ED+ + N T L T + +++G
Sbjct: 34 FHRKEDLLVTSSEDDSIRLYNITSATLLKTTYHRKHG 70
>08_02_1342 - 26268552-26268783,26270213-26271137,26271680-26272907
Length = 794
Score = 29.9 bits (64), Expect = 2.6
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = -2
Query: 652 DSIFXLILXSNL*FFCCVFSTISHVKF 572
DSIF L S++ CC FS++SHV F
Sbjct: 310 DSIFGGQLSSHISCKCCSFSSVSHVAF 336
>04_04_1593 -
34661670-34661798,34661882-34661989,34662129-34662368,
34662614-34662782,34662872-34663362,34663681-34663991,
34664396-34664473,34665034-34665228,34665363-34665524,
34665759-34665840
Length = 654
Score = 29.9 bits (64), Expect = 2.6
Identities = 10/29 (34%), Positives = 14/29 (48%)
Frame = +1
Query: 277 WQCLFCKFGPSTCKTSCNICRFAKKYHMY 363
WQC C+ G K SC C + + +Y
Sbjct: 43 WQCTICEHGNDAKKKSCEQCGVLRYFSLY 71
>02_01_0725 -
5422477-5422641,5422721-5422792,5422876-5422958,
5423113-5423173,5423305-5423381,5423456-5423522,
5423770-5423803,5423894-5423974,5424285-5424436,
5424529-5424615,5425019-5425126,5425906-5426259
Length = 446
Score = 29.9 bits (64), Expect = 2.6
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = +2
Query: 380 CASGMKSIMLAAQGLQTGAQDIILAGGMES 469
CA+G SI A + +Q G D+++AGG ES
Sbjct: 193 CATGAHSIGDATRMIQFGDADVMVAGGTES 222
>04_04_0792 -
28091597-28091675,28091853-28091908,28092151-28092211,
28092290-28092363,28092865-28092945,28093127-28093201,
28093276-28093395,28093486-28093566,28093644-28093712,
28094057-28094128,28094220-28094362,28094452-28094566,
28094651-28094774,28095124-28095476,28096035-28096374,
28096914-28097124,28097209-28097482,28097570-28097788,
28097868-28098004,28098117-28098375
Length = 980
Score = 28.7 bits (61), Expect = 6.1
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +1
Query: 433 SPRYNTCWWDGIYVKCTFLF 492
S Y+ CWW + V+C F F
Sbjct: 470 SDLYDRCWWPPVCVRCIFRF 489
>12_02_0279 - 16704284-16704925
Length = 213
Score = 28.3 bits (60), Expect = 8.1
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = +1
Query: 352 YHMYNCKQSMCLWH 393
YH Y CK MCLWH
Sbjct: 201 YHKY-CKSRMCLWH 213
>03_06_0064 +
31395168-31395223,31396906-31397368,31397440-31397598,
31397686-31397751,31397856-31397935,31397991-31398099
Length = 310
Score = 28.3 bits (60), Expect = 8.1
Identities = 8/23 (34%), Positives = 13/23 (56%)
Frame = +1
Query: 391 HEIYNVGSTRSTNWSPRYNTCWW 459
H + +G+ S +W P TC+W
Sbjct: 65 HALGGIGACSSVHWQPDRGTCYW 87
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,520,556
Number of Sequences: 37544
Number of extensions: 402163
Number of successful extensions: 1136
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1132
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2326952232
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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