Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_O09
         (510 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11G7.03 |idh1|glu3|isocitrate dehydrogenase |Schizosaccharom...    28   0.71 
SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pomb...    27   1.2  
SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|ch...    27   1.2  
SPCC1183.01 |sec15|SPCC1672.13|exocyst complex subunit Sec15 |Sc...    25   6.6  
SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|c...    25   8.7  
SPAC23D3.12 |||inorganic phosphate transporter |Schizosaccharomy...    25   8.7  
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz...    25   8.7  

>SPAC11G7.03 |idh1|glu3|isocitrate dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 356

 Score = 28.3 bits (60), Expect = 0.71
 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 6/55 (10%)
 Frame = +1

Query: 211 AVISYEKKGKGITLIHTNVPQAFQGKGV-----GKLLAQYAFDHALEN-RLNVIC 357
           A+I    +G+   L H +VP   +   +      K +AQ+AFD AL+N R +V C
Sbjct: 134 AIIRENTEGEYSGLEHQSVPGVVESLKIITEYKSKRIAQFAFDFALQNGRKSVTC 188


>SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1389

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 14/31 (45%), Positives = 15/31 (48%)
 Frame = +3

Query: 291 SWEIIGTVCL*SCFRKQVECDLQMSLFSQIL 383
           SWEI+G  CL  C  K        SL S IL
Sbjct: 802 SWEILGDACLSFCQLKNYHNRFPNSLISDIL 832


>SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 752

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = -1

Query: 297 PNSFSLKSLRHICMDQGYPLAFFLIADHSIFSF 199
           PNS SL S ++I +D+G+P  +  I   S+F +
Sbjct: 279 PNSSSLLSEKYITLDKGFPSKY--IYSRSLFEY 309


>SPCC1183.01 |sec15|SPCC1672.13|exocyst complex subunit Sec15
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 785

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -1

Query: 288 FSLKSLRHICMDQGYPLAFFLIADHSIF 205
           FS++SLR++C++        LI  HS+F
Sbjct: 388 FSVESLRNLCVELIDAFGGALILKHSVF 415


>SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 479

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = -3

Query: 385 RRIWLKSDICKSHSTCFLKHDQRHTVPIISQLLFL 281
           RRI  +SD+   +S  F+  + RH +PI S + F+
Sbjct: 182 RRIG-RSDVSDLNSDPFVMFNHRHFLPIASFMAFI 215


>SPAC23D3.12 |||inorganic phosphate transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 559

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -1

Query: 72  FLLIVQFYVTNMSQKLNMKIIG 7
           FLL + FY  N++Q + +K IG
Sbjct: 345 FLLDIAFYGVNLNQSVILKAIG 366


>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
          |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1273

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -1

Query: 96 FSNLQSPNFLLIVQFYVTNMSQ 31
          F+ +  P F LIV FY  N S+
Sbjct: 22 FNEILPPRFTLIVSFYSMNTSE 43


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,010,995
Number of Sequences: 5004
Number of extensions: 38246
Number of successful extensions: 102
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 204242806
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)