Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_O09
         (510 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1313 - 29252335-29252446,29253430-29253671,29253770-292538...    29   2.2  
09_03_0170 - 13035371-13036504                                         29   2.9  
07_03_1550 + 27641099-27641288,27641433-27641646,27641738-276418...    29   2.9  
07_01_0635 + 4753919-4754090,4754200-4754258,4754377-4754432,475...    28   5.0  
08_02_0927 - 22685348-22685635,22685823-22685972,22686224-22687042     27   6.6  
08_01_0193 + 1599970-1600503,1601488-1601919,1602010-1602147,160...    27   6.6  

>06_03_1313 -
           29252335-29252446,29253430-29253671,29253770-29253848,
           29254991-29255130,29255262-29255571,29255810-29255952,
           29256106-29256306,29256453-29256581,29256921-29257199,
           29258036-29259720,29261255-29261764,29261901-29262108,
           29264347-29264458,29264594-29264763
          Length = 1439

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 2/83 (2%)
 Frame = +1

Query: 217 ISYEKKGKGITLIHTNVP--QAFQGKGVGKLLAQYAFDHALENRLNVICKCHFLAKFYED 390
           IS E+  + +  +H   P  Q  Q +   KL  Q +  H + +R NV+ +CH  +   E 
Sbjct: 402 ISLEQLHQQVNQLHLIQPHSQYAQNQCSLKLQQQNSLHHLVMSRGNVLTQCHLGSDHAEK 461

Query: 391 NINKYKVLNVKLELE*FNHGFGL 459
            ++K   L+ +L     N   GL
Sbjct: 462 LLDKRNQLHSELVSSQINEHVGL 484


>09_03_0170 - 13035371-13036504
          Length = 377

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 20/70 (28%), Positives = 37/70 (52%), Gaps = 5/70 (7%)
 Frame = +1

Query: 193 SIKGEDAVISYEKKGKGITLIHTNVPQAFQGKGVGKLLAQYAFDHAL-----ENRLNVIC 357
           S +GE  V++ E++GK + L+  N  Q+ + + V  L +Q  F  +L     + + N + 
Sbjct: 241 SNQGELMVVAIERRGKKVHLVKLN-EQSMEWEKVDSLHSQTVFTGSLTTMMKKTKFNWMQ 299

Query: 358 KCHFLAKFYE 387
              FL +FY+
Sbjct: 300 NMIFLPRFYQ 309


>07_03_1550 +
           27641099-27641288,27641433-27641646,27641738-27641843,
           27642213-27642257,27642275-27642540,27642980-27642991,
           27643201-27643480,27643716-27643823,27644276-27644362,
           27644448-27644552,27644995-27645125,27645249-27645309
          Length = 534

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
 Frame = +1

Query: 136 FSTEALKVVNNVAKQQFAVSIK----GEDAVISYEKKGKGITLIHTNVPQAFQGK 288
           F+TEA+ VV+N   Q   + +K    GE++V+  E KG    + HT   Q  QG+
Sbjct: 289 FNTEAVDVVSNPKGQMSGIQLKRTDTGEESVL--EVKGLFYGIGHTPNSQLLQGQ 341


>07_01_0635 +
           4753919-4754090,4754200-4754258,4754377-4754432,
           4754698-4754842,4755506-4755580,4755844-4755933,
           4756218-4756295,4757879-4758376,4758512-4758997
          Length = 552

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 22/72 (30%), Positives = 32/72 (44%)
 Frame = +1

Query: 139 STEALKVVNNVAKQQFAVSIKGEDAVISYEKKGKGITLIHTNVPQAFQGKGVGKLLAQYA 318
           ++EAL    ++       ++KG    + Y  K KGIT + +      QG GVG     Y 
Sbjct: 119 TSEALSRYYDITVGSGLKAVKGSRVAVHYVAKWKGITFMTSR-----QGLGVGG-GTPYG 172

Query: 319 FDHALENRLNVI 354
           FD     R NV+
Sbjct: 173 FDIGNSERGNVL 184


>08_02_0927 - 22685348-22685635,22685823-22685972,22686224-22687042
          Length = 418

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = -3

Query: 388 LRRIWLKSDICKSHSTCFLKHDQRHTVPIISQLLFLEKPAAHLYGSRLS 242
           LR +WL S  C S+  CF+K        ++S+   LE  +  +  SRLS
Sbjct: 352 LRDVWLHSIDCSSNEMCFIKF-------VLSKARSLELFSVRVTSSRLS 393


>08_01_0193 +
           1599970-1600503,1601488-1601919,1602010-1602147,
           1602532-1602600
          Length = 390

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +3

Query: 264 CAAGFSRKRSWEIIGTVCL*SCFRKQVECDLQMSLF 371
           CA  F+   SW  + T+ L SC    + C+LQ+  F
Sbjct: 215 CAVLFASIMSWMYLTTIILTSCMLFNLVCNLQVIHF 250


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,085,910
Number of Sequences: 37544
Number of extensions: 217283
Number of successful extensions: 384
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 382
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 384
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1095026320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)