Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_O09
         (510 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    25   0.34 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    25   0.34 
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    23   1.4  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    21   5.6  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   5.6  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   7.4  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 25.4 bits (53), Expect = 0.34
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -1

Query: 297  PNSFSLKSLRHICMDQGYPLAFFLIADHSIFSFY 196
            PNS +L    H+  D G P+ +F I    I  F+
Sbjct: 1510 PNSTTLVLRLHVWPDNGCPILYFTIQYRPINEFH 1543


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 25.4 bits (53), Expect = 0.34
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -1

Query: 297  PNSFSLKSLRHICMDQGYPLAFFLIADHSIFSFY 196
            PNS +L    H+  D G P+ +F I    I  F+
Sbjct: 1506 PNSTTLVLRLHVWPDNGCPILYFTIQYRPINEFH 1539


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -3

Query: 331 KHDQRHTVPIISQLLFLEKPAAHLYGSRLS 242
           KH   HT+ + ++LL + +    LY  RL+
Sbjct: 128 KHSYVHTITVPNKLLRISQDGDILYSMRLT 157


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = -2

Query: 446 WLNYSNSSF 420
           WL YSNS+F
Sbjct: 312 WLGYSNSAF 320


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -3

Query: 331 KHDQRHTVPIISQLLFLEKPAAHLYGSRLS 242
           KH   HT+   ++ + L +    LY SRL+
Sbjct: 96  KHSYLHTITSPNKFVRLYQDGRVLYSSRLT 125


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.0 bits (42), Expect = 7.4
 Identities = 6/17 (35%), Positives = 9/17 (52%)
 Frame = -2

Query: 491 PVNNNXYYIYAKPNPWL 441
           P N    ++  KP PW+
Sbjct: 222 PFNTTTIFVPVKPCPWI 238


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,665
Number of Sequences: 438
Number of extensions: 2725
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14109465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)