Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_F_O07
(826 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3F10.10c |map3||pheromone M-factor receptor |Schizosaccharom... 28 1.8
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S... 27 4.3
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 26 7.5
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 25 9.9
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 25 9.9
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 25 9.9
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 25 9.9
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 25 9.9
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 25 9.9
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 25 9.9
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 25 9.9
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 25 9.9
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 25 9.9
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 25 9.9
>SPAC3F10.10c |map3||pheromone M-factor receptor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 365
Score = 27.9 bits (59), Expect = 1.8
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -3
Query: 677 CFLLIFWLSMRELINLF*SLLW 612
C LL+FWL++ LI + S +W
Sbjct: 34 CLLLLFWLTLTTLIYVVESAIW 55
>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 971
Score = 26.6 bits (56), Expect = 4.3
Identities = 15/32 (46%), Positives = 19/32 (59%)
Frame = +2
Query: 707 IKKKLNCEMLKTKRIFELLYIRSELILRKFVF 802
IKK N + K + +F LLY SE+ L FVF
Sbjct: 262 IKKDSNVKCSKKQILFSLLYFSSEVYL-SFVF 292
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 25.8 bits (54), Expect = 7.5
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = +2
Query: 374 HITYLYKIFNIFVRRRKAYF 433
++ YLY I++IFV +AY+
Sbjct: 1468 NLNYLYSIWSIFVHWHRAYY 1487
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 9.9
Identities = 10/33 (30%), Positives = 21/33 (63%)
Frame = +2
Query: 662 RSKENNQKINRFTITIKKKLNCEMLKTKRIFEL 760
++ EN+Q+ + T+K+ LN +K K+ F++
Sbjct: 1152 KTDENSQETIQVFQTVKEHLNTNNIKMKKYFDM 1184
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 9.9
Identities = 10/33 (30%), Positives = 21/33 (63%)
Frame = +2
Query: 662 RSKENNQKINRFTITIKKKLNCEMLKTKRIFEL 760
++ EN+Q+ + T+K+ LN +K K+ F++
Sbjct: 1152 KTDENSQETIQVFQTVKEHLNTNNIKMKKYFDM 1184
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 9.9
Identities = 10/33 (30%), Positives = 21/33 (63%)
Frame = +2
Query: 662 RSKENNQKINRFTITIKKKLNCEMLKTKRIFEL 760
++ EN+Q+ + T+K+ LN +K K+ F++
Sbjct: 1152 KTDENSQETIQVFQTVKEHLNTNNIKMKKYFDM 1184
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 9.9
Identities = 10/33 (30%), Positives = 21/33 (63%)
Frame = +2
Query: 662 RSKENNQKINRFTITIKKKLNCEMLKTKRIFEL 760
++ EN+Q+ + T+K+ LN +K K+ F++
Sbjct: 1152 KTDENSQETIQVFQTVKEHLNTNNIKMKKYFDM 1184
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 9.9
Identities = 10/33 (30%), Positives = 21/33 (63%)
Frame = +2
Query: 662 RSKENNQKINRFTITIKKKLNCEMLKTKRIFEL 760
++ EN+Q+ + T+K+ LN +K K+ F++
Sbjct: 1152 KTDENSQETIQVFQTVKEHLNTNNIKMKKYFDM 1184
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 9.9
Identities = 10/33 (30%), Positives = 21/33 (63%)
Frame = +2
Query: 662 RSKENNQKINRFTITIKKKLNCEMLKTKRIFEL 760
++ EN+Q+ + T+K+ LN +K K+ F++
Sbjct: 1152 KTDENSQETIQVFQTVKEHLNTNNIKMKKYFDM 1184
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 9.9
Identities = 10/33 (30%), Positives = 21/33 (63%)
Frame = +2
Query: 662 RSKENNQKINRFTITIKKKLNCEMLKTKRIFEL 760
++ EN+Q+ + T+K+ LN +K K+ F++
Sbjct: 1152 KTDENSQETIQVFQTVKEHLNTNNIKMKKYFDM 1184
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 9.9
Identities = 10/33 (30%), Positives = 21/33 (63%)
Frame = +2
Query: 662 RSKENNQKINRFTITIKKKLNCEMLKTKRIFEL 760
++ EN+Q+ + T+K+ LN +K K+ F++
Sbjct: 1152 KTDENSQETIQVFQTVKEHLNTNNIKMKKYFDM 1184
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 9.9
Identities = 10/33 (30%), Positives = 21/33 (63%)
Frame = +2
Query: 662 RSKENNQKINRFTITIKKKLNCEMLKTKRIFEL 760
++ EN+Q+ + T+K+ LN +K K+ F++
Sbjct: 1152 KTDENSQETIQVFQTVKEHLNTNNIKMKKYFDM 1184
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 9.9
Identities = 10/33 (30%), Positives = 21/33 (63%)
Frame = +2
Query: 662 RSKENNQKINRFTITIKKKLNCEMLKTKRIFEL 760
++ EN+Q+ + T+K+ LN +K K+ F++
Sbjct: 1152 KTDENSQETIQVFQTVKEHLNTNNIKMKKYFDM 1184
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 9.9
Identities = 10/33 (30%), Positives = 21/33 (63%)
Frame = +2
Query: 662 RSKENNQKINRFTITIKKKLNCEMLKTKRIFEL 760
++ EN+Q+ + T+K+ LN +K K+ F++
Sbjct: 1152 KTDENSQETIQVFQTVKEHLNTNNIKMKKYFDM 1184
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,117,210
Number of Sequences: 5004
Number of extensions: 62166
Number of successful extensions: 146
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 404442380
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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