Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_F_O04
(889 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC215.09c |erg10||acetyl-CoA C-acetyltransferase Erg10 |Schizo... 163 2e-41
SPBC887.13c |||3-oxoacyl-[acyl-carrier-protein]-synthase |Schizo... 31 0.29
SPBC660.07 |ntp1||alpha,alpha-trehalase Ntp1|Schizosaccharomyces... 27 3.6
SPCC962.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 27 3.6
SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||... 27 3.6
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 26 6.2
SPBC29A3.05 |||chromatin remodeling complex subunit|Schizosaccha... 26 6.2
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom... 26 8.2
SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1 |Sc... 26 8.2
>SPBC215.09c |erg10||acetyl-CoA C-acetyltransferase Erg10
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 395
Score = 163 bits (397), Expect = 2e-41
Identities = 82/179 (45%), Positives = 111/179 (62%), Gaps = 2/179 (1%)
Frame = +3
Query: 144 EVVIASAVRTPMXXXXXXXXXXXXXXXXXXXVNAAIERAGIPKEEIKEVYIGNVCSANLG 323
EV I SAVRTPM + A+ER I ++ EV++GNV SANLG
Sbjct: 5 EVYIVSAVRTPMGSFGGSFASLPATKLGSIAIKGALERVNIKPSDVDEVFMGNVVSANLG 64
Query: 324 QAPARQAVIFAGLPKSTICTTVNKVCASGMKSIMLAAQGLQTGAQDIILAGGMESMSNVP 503
Q PARQ + AGLP+S +CTTVNKVCASGMK+ +L AQ + TG +I++AGG ESMSN P
Sbjct: 65 QNPARQCALGAGLPRSIVCTTVNKVCASGMKATILGAQTIMTGNAEIVVAGGTESMSNAP 124
Query: 504 FYLKRGE--TSYGGMQLVDGIVFDGLTDVYNKFHMGNCAENTAKNYKLLDKIKMNMLSI 674
+Y + YG ++LVDG++ DGL+D Y+ MGN AE A+ + +D+ + +I
Sbjct: 125 YYAPKNRFGAKYGNVELVDGLLRDGLSDAYDGLPMGNAAELCAEEHS-IDRASQDAFAI 182
Score = 83.0 bits (196), Expect = 5e-17
Identities = 45/85 (52%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Frame = +2
Query: 638 ITRQDQDEYAVNSYKRSAAAYEAKAFVDELVPVPVPQKRGAP-VIFAEDEEYKRVNFEKF 814
I R QD +A++SYKR+ A KAF E+VPV VP RG P + EDEE K +N +K
Sbjct: 172 IDRASQDAFAISSYKRAQNAQATKAFEQEIVPVEVPVGRGKPNKLVTEDEEPKNLNEDKL 231
Query: 815 TKLSTVXQKENGTVTAGNASTLNDG 889
+ V K NGTVTA NASTLNDG
Sbjct: 232 KSVRAVF-KSNGTVTAANASTLNDG 255
>SPBC887.13c |||3-oxoacyl-[acyl-carrier-protein]-synthase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 30.7 bits (66), Expect = 0.29
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +3
Query: 384 TVNKVCASGMKSIMLAAQGLQTGAQDIILAGGMESMSN 497
T CA+G +I A ++ G D+I+AGG ES N
Sbjct: 165 TTTTACAAGCHAIGDAFNFIKLGHADVIIAGGSESCIN 202
>SPBC660.07 |ntp1||alpha,alpha-trehalase Ntp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 735
Score = 27.1 bits (57), Expect = 3.6
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = -1
Query: 184 EPIGVLTADAITTSLRETLVENAAIAVNICNKTLKSNKTMFLL 56
E +G+L D + L + +VEN + K L +N+T +LL
Sbjct: 295 ESLGLLVDDRV--DLAKGMVENFIFEITYYGKILNANRTYYLL 335
>SPCC962.05 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 536
Score = 27.1 bits (57), Expect = 3.6
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +2
Query: 764 VIFAEDEEYKRVNFEKFTKLSTVXQKENGTVTAGNASTLNDG 889
+IF+ED+E ++F++F S + N + AS L G
Sbjct: 445 LIFSEDKEQSSISFQEFVSFSPLSSTLNFALFHQAASKLKTG 486
>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1096
Score = 27.1 bits (57), Expect = 3.6
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +1
Query: 43 WLLCPTETSSYWTLTSYCRYLQ 108
W+L P ETS+Y +TS Y+Q
Sbjct: 143 WVLMPLETSAYSLVTSTPAYIQ 164
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 26.2 bits (55), Expect = 6.2
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = +2
Query: 650 DQDEYAVNSYKRSAAAYEA-KAFVDELVPVPVPQKRGAPVIFAEDEEYKRVNFEK 811
++ +YA +S + A YE K + L+ +PV Q VIF + Y RV EK
Sbjct: 208 NESDYA-SSQQLLADIYEIFKYSITSLLQIPVSQLSQYSVIFIVPDLYDRVYVEK 261
>SPBC29A3.05 |||chromatin remodeling complex
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 139
Score = 26.2 bits (55), Expect = 6.2
Identities = 9/20 (45%), Positives = 11/20 (55%)
Frame = +2
Query: 344 CNICRFAKKYHMYNCKQSMC 403
CN+C + KY NC S C
Sbjct: 102 CNVCGYWGKYACQNCGTSYC 121
>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1016
Score = 25.8 bits (54), Expect = 8.2
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +2
Query: 731 PVPVPQKRGAPVIFAEDEEYKRVNFEKFTKLSTVXQKENGTV 856
P+PVP + V + KR+ E FT LS + + G V
Sbjct: 656 PIPVPSVETSVVAQDLTHKAKRIGLEDFTFLSVLGKGNFGKV 697
>SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 899
Score = 25.8 bits (54), Expect = 8.2
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = -1
Query: 163 ADAITTSLRETL-VENAAIAVNICNKTLKSNKTMFLLD 53
++ I S+R T+ +E A +A +CN + NK +LD
Sbjct: 358 SEHIELSVRRTVGIEKALLAAALCNNSKVHNKADSILD 395
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,440,143
Number of Sequences: 5004
Number of extensions: 70106
Number of successful extensions: 236
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 221
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 234
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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