Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_O04
         (889 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51267| Best HMM Match : Thiolase_N (HMM E-Value=2.2e-35)           124   7e-29
SB_12473| Best HMM Match : No HMM Matches (HMM E-Value=.)             123   2e-28
SB_30176| Best HMM Match : No HMM Matches (HMM E-Value=.)              71   2e-12
SB_25136| Best HMM Match : Thiolase_N (HMM E-Value=4.4e-09)            43   3e-04
SB_57005| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.6  
SB_8022| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   5.0  
SB_38435| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.0  
SB_47409| Best HMM Match : Ldl_recept_a (HMM E-Value=1.2e-17)          29   6.6  
SB_36506| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.6  
SB_33413| Best HMM Match : DUF81 (HMM E-Value=0.31)                    28   8.8  
SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.8  
SB_27914| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.8  

>SB_51267| Best HMM Match : Thiolase_N (HMM E-Value=2.2e-35)
          Length = 415

 Score =  124 bits (300), Expect = 7e-29
 Identities = 58/99 (58%), Positives = 76/99 (76%), Gaps = 1/99 (1%)
 Frame = +2

Query: 596 SHGKLC*KHSKKLQITRQDQDEYAVNSYKRSAAAYEAKAFVDELVPVPVPQKRGAP-VIF 772
           S G      + K  ITR++QD+YA++SY+R+AAA++A  F  E+VPV +PQK+G P ++F
Sbjct: 57  SQGVCAENAASKYNITREEQDDYAIHSYRRTAAAWDAGKFKQEVVPVNIPQKKGKPDIVF 116

Query: 773 AEDEEYKRVNFEKFTKLSTVXQKENGTVTAGNASTLNDG 889
            EDEEYK+V+FEKF  L TV +KENGTVTA NASTLNDG
Sbjct: 117 EEDEEYKKVSFEKFPSLKTVFKKENGTVTAANASTLNDG 155



 Score = 62.9 bits (146), Expect = 3e-10
 Identities = 35/60 (58%), Positives = 40/60 (66%), Gaps = 11/60 (18%)
 Frame = +3

Query: 318 LGQAPARQAVIFAG-----------LPKSTICTTVNKVCASGMKSIMLAAQGLQTGAQDI 464
           +GQAPARQA + AG           LP ST CTT+NKVCASGMKSIM AAQ L  G+Q +
Sbjct: 1   MGQAPARQAALGAGTRXVTSIRDQALPISTPCTTINKVCASGMKSIMAAAQSLMCGSQGV 60


>SB_12473| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 387

 Score =  123 bits (296), Expect = 2e-28
 Identities = 65/167 (38%), Positives = 91/167 (54%), Gaps = 1/167 (0%)
 Frame = +3

Query: 144 EVVIASAVRTPMXXXXXXXXXXXXXXXXXXXVNAAIERAGIPKEEIKEVYIGNVCSANLG 323
           +V+IA AVRTP+                   V  A+ RA I   ++ EV +G V +A  G
Sbjct: 9   DVIIACAVRTPVGSHNGDLSSLKAHELGSIVVKEALCRASISPCDVSEVILGQVLTAGQG 68

Query: 324 QAPARQAVIFAGLPKSTICTTVNKVCASGMKSIMLAAQGLQTGAQDIILAGGMESMSNVP 503
           Q PARQA I AG+P       VN +C SG+K++ L  Q +  G  +I++AGG ESMS  P
Sbjct: 69  QGPARQAAIHAGIPACVPAYGVNMLCGSGLKAVALGYQAVAMGDSNIVVAGGQESMSQAP 128

Query: 504 FYL-KRGETSYGGMQLVDGIVFDGLTDVYNKFHMGNCAENTAKNYKL 641
                R    +G M L+D ++ DGL D +N +HMG  AEN AK +++
Sbjct: 129 HCCHMRPALKFGDMTLIDTMLKDGLMDSFNNYHMGITAENVAKQWEV 175



 Score = 53.2 bits (122), Expect = 3e-07
 Identities = 29/90 (32%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
 Frame = +2

Query: 623 SKKLQITRQDQDEYAVNSYKRSAAAYEAKAFVDELVPVPVPQKRGAPVIFAEDEEYKRVN 802
           +K+ +++R++QD +A+ S +R+  A +A  F DE+V V +  + G   + ++        
Sbjct: 170 AKQWEVSREEQDNFALTSQQRTETAQKAGYFSDEIVTVSIKTRAGLTEVNSDQFPRHGCT 229

Query: 803 FEKFTKLSTVXQKE-NGTVTAGNASTLNDG 889
            E   KL      +  GTV+AGN S LNDG
Sbjct: 230 IEGLRKLKPCFLFDGKGTVSAGNTSGLNDG 259


>SB_30176| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1012

 Score = 70.5 bits (165), Expect = 2e-12
 Identities = 41/85 (48%), Positives = 57/85 (67%), Gaps = 1/85 (1%)
 Frame = +2

Query: 623  SKKLQITRQDQDEYAVNSYKRSAAAYEAKAFVDELVPVPVPQKRGAPVIFAEDEEYK-RV 799
            ++K  ITR++ D++A+ S +R AAA+E+ AF  E+VPVPV  K+G P  FA DE  +   
Sbjct: 827  AEKYNITREECDQFALLSQQRWAAAHESGAFTAEIVPVPVKGKKG-PEQFAVDEHPRPET 885

Query: 800  NFEKFTKLSTVXQKENGTVTAGNAS 874
              E+  KL  V  K+NGTV+AGNAS
Sbjct: 886  TIEQLAKLPAVF-KKNGTVSAGNAS 909



 Score = 40.3 bits (90), Expect(2) = 1e-05
 Identities = 31/109 (28%), Positives = 44/109 (40%), Gaps = 1/109 (0%)
 Frame = +3

Query: 114  AAFSTKVSLNEVVIASAVRTPMXXXXXXXXXXXXXXXXXXXVNAAIERAGIPKEEIKEVY 293
            A F  +  L+    A+A RT                       AA+E   +    +  V 
Sbjct: 693  AGFLCEAWLSNKKFAAAKRTAFGAFGGRLKDFTATVLGEHASVAAMESGKVDPATVDSVI 752

Query: 294  IGNVCS-ANLGQAPARQAVIFAGLPKSTICTTVNKVCASGMKSIMLAAQ 437
             GNV   AN     AR   I + +P +T   TVN++C SG +SI+  AQ
Sbjct: 753  FGNVLQCANDAAYVARHIGIKSKVPVTTPALTVNRLCGSGFQSIISGAQ 801



 Score = 26.6 bits (56), Expect(2) = 1e-05
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +3

Query: 537 GMQLVDGIVFDGLTDVYNKFHMGNCAENTAKNYKL 641
           G Q+ D + + GLTD+     MG  AEN A+ Y +
Sbjct: 799 GAQMEDTL-WQGLTDMLPGLPMGITAENLAEKYNI 832


>SB_25136| Best HMM Match : Thiolase_N (HMM E-Value=4.4e-09)
          Length = 162

 Score = 43.2 bits (97), Expect = 3e-04
 Identities = 26/84 (30%), Positives = 43/84 (51%)
 Frame = +2

Query: 638 ITRQDQDEYAVNSYKRSAAAYEAKAFVDELVPVPVPQKRGAPVIFAEDEEYKRVNFEKFT 817
           ++RQ+QDEYA+ S+  +  A +A    D ++   VP   G   + + D   +    ++  
Sbjct: 26  VSRQEQDEYALRSHTLAHQATQAGKLTD-VLSYQVP---GTTTVLSADNGIRVSTPQQMA 81

Query: 818 KLSTVXQKENGTVTAGNASTLNDG 889
           KL     +  GT+TA N+S L DG
Sbjct: 82  KLKPAFIRPFGTITAANSSFLTDG 105


>SB_57005| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 251

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
 Frame = -3

Query: 545 LHSSIRSFTSLQIKRYI*HRFHPTSKYYILGSSL*TLCCQ-HYRFHARGTYFVYSCTYGT 369
           +HS+ R+  +    RY     H T     + S+  TLC Q H R+  + T+ +YS T+  
Sbjct: 102 MHSNTRTLCTKTHARYALKHTHTT-----MHSNTRTLCTQTHARYALKHTHTMYSNTHTL 156

Query: 368 FWQTCKYYSL 339
             QT  +Y+L
Sbjct: 157 CTQTHAHYAL 166


>SB_8022| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 386

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = +2

Query: 680 KRSAAAYEAKAFVDELVPVPVPQKRGAPVIFAEDEEYKRVNFEKFTK 820
           KR    + A+    ELV V  P  +    + A+  EYKR N    +K
Sbjct: 117 KRQKVKHRAQYIFKELVNVAEPHSKNTGTVLAQCPEYKRKNSSPSSK 163


>SB_38435| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 101

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = +2

Query: 680 KRSAAAYEAKAFVDELVPVPVPQKRGAPVIFAEDEEYKRVNFEKFTK 820
           KR    + A+    ELV V  P  +    + A+  EYKR N    +K
Sbjct: 28  KRQKVKHRAQYIFKELVNVAEPHSKNTGTVLAQCPEYKRKNSSPSSK 74


>SB_47409| Best HMM Match : Ldl_recept_a (HMM E-Value=1.2e-17)
          Length = 1571

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 19/61 (31%), Positives = 29/61 (47%)
 Frame = -1

Query: 280  ISSLGIPALSIAALTATAPNSDADKLDKLPRKEPIGVLTADAITTSLRETLVENAAIAVN 101
            I+S  +P  +   L AT   S    L+K   +E +    A A+ T +  TLVE   + VN
Sbjct: 972  ITSTSVPEQNATVLPATTFQS----LNKTTTEESVVEPNATAVPTRVNATLVETTGMPVN 1027

Query: 100  I 98
            +
Sbjct: 1028 V 1028


>SB_36506| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 198

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
 Frame = +2

Query: 296 WQCLFCKFGPSTCKTSCNICRFAKKY-HMYNCK-QSMCLWHEIYNVGSTR 439
           W+C   K  PS  ++   +  F KKY H +    +S  LW+  Y + + R
Sbjct: 80  WECEHVKPVPSDVRSKMRLSGFYKKYLHAFGIPVRSNTLWYRTYAMSTDR 129


>SB_33413| Best HMM Match : DUF81 (HMM E-Value=0.31)
          Length = 455

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -1

Query: 826 RQFCKLFKINSFILFIFSKYYRSPSFLWN 740
           R  CK++K   ++LF+FS    + + +WN
Sbjct: 23  RVTCKVYKRRWYVLFVFSAAAMTSNVMWN 51


>SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4529

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +2

Query: 296 WQCLFCKFGPSTCKTSCNICRFAKKYHMYNCKQSMCL 406
           WQ  + + GP   KTSC +C    KY++ N     CL
Sbjct: 864 WQSNYTQCGPCASKTSCPVCNI--KYNL-NDLMIQCL 897


>SB_27914| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 220

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 27/102 (26%), Positives = 41/102 (40%)
 Frame = +3

Query: 249 IERAGIPKEEIKEVYIGNVCSANLGQAPARQAVIFAGLPKSTICTTVNKVCASGMKSIML 428
           I + GI  EEI      +V  A +        + + G PKS +CT+VN+V   G+ +   
Sbjct: 72  IVKVGITTEEIDY----HVHKAIIEHGAYPSPLNYRGFPKS-VCTSVNEVAVHGIPNSRC 126

Query: 429 AAQGLQTGAQDIILAGGMESMSNVPFYLKRGETSYGGMQLVD 554
              G        +  GG+       F +  G     G +LVD
Sbjct: 127 LQNGDLLSVDISLFYGGVHGDLCETFLV--GNVDESGRRLVD 166


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,534,117
Number of Sequences: 59808
Number of extensions: 536552
Number of successful extensions: 1566
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1367
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1557
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2538363813
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)