Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_O01
         (784 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF098504-3|AAK73898.4| 2395|Caenorhabditis elegans Leucine-rich ...    31   0.93 
AB297384-1|BAF48647.1| 2393|Caenorhabditis elegans PARK8-related...    31   0.93 
U58757-2|AAC47915.2|  402|Caenorhabditis elegans Hypothetical pr...    29   5.0  
U39676-1|AAB37030.1|  186|Caenorhabditis elegans Hypothetical pr...    29   5.0  

>AF098504-3|AAK73898.4| 2395|Caenorhabditis elegans Leucine-rich
           repeats, ras-likedomain, kinase protein 1 protein.
          Length = 2395

 Score = 31.1 bits (67), Expect = 0.93
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = -3

Query: 779 HEFPXCLQCTRPKFSLIISFSNN 711
           H FP CL CT P+  LI++ SNN
Sbjct: 732 HTFPFCLACTCPRL-LILNMSNN 753


>AB297384-1|BAF48647.1| 2393|Caenorhabditis elegans PARK8-related
           kinase protein.
          Length = 2393

 Score = 31.1 bits (67), Expect = 0.93
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = -3

Query: 779 HEFPXCLQCTRPKFSLIISFSNN 711
           H FP CL CT P+  LI++ SNN
Sbjct: 730 HTFPFCLACTCPRL-LILNMSNN 751


>U58757-2|AAC47915.2|  402|Caenorhabditis elegans Hypothetical
           protein C01B10.3 protein.
          Length = 402

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = -3

Query: 341 SSAVMCQCLAVTERFYTIFRGAESFCSTKLESFSSLELYK 222
           ++ V+C C+      Y  F  + +F  TKL    +L L+K
Sbjct: 59  AARVICGCITDNPEIYRAFDSSMAFFDTKLTGLGNLYLFK 98


>U39676-1|AAB37030.1|  186|Caenorhabditis elegans Hypothetical
           protein C23F12.4 protein.
          Length = 186

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 16/45 (35%), Positives = 26/45 (57%)
 Frame = +1

Query: 139 CESNTRKVNEPRVQSTTPHVALRESD*GLYNSNDENDSSFVLQKL 273
           CE +     +PR +S T  V LR+    L  ++D+N+ +FVL+ L
Sbjct: 33  CEQHG-STEDPRKESITARVFLRKRMKELPETDDKNNKAFVLRAL 76


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,055,469
Number of Sequences: 27780
Number of extensions: 271929
Number of successful extensions: 577
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 557
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 577
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1893203640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)