Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_N24
         (602 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   1.7  
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    23   2.3  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    22   4.0  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   7.0  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -1

Query: 179 PHRHHRSPYH 150
           PH+HH S YH
Sbjct: 318 PHQHHPSQYH 327


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
          protein-1 protein.
          Length = 128

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = -2

Query: 61 LREQ*TNYCIGCRCTTHR 8
          +R+  T+YC+GC  + H+
Sbjct: 28 IRQGTTSYCLGCGDSCHK 45


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = -3

Query: 396 FTFPSAMSRRK 364
           FT+PS MSRR+
Sbjct: 152 FTYPSKMSRRR 162



 Score = 21.4 bits (43), Expect = 7.0
 Identities = 7/17 (41%), Positives = 8/17 (47%)
 Frame = -2

Query: 298 VWWWYTDNRAVPHDRMP 248
           VWW       VP D+ P
Sbjct: 183 VWWRAVRTEEVPEDKCP 199


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 10/25 (40%), Positives = 13/25 (52%), Gaps = 4/25 (16%)
 Frame = +2

Query: 260 MWDSSIIGIPPP----DVPVNDESQ 322
           +W    + IPPP    +VP N  SQ
Sbjct: 756 LWQPLSVSIPPPPSAQNVPQNTNSQ 780


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,467
Number of Sequences: 438
Number of extensions: 2720
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17726685
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)