Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_F_N22
(421 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ... 27 0.90
SPCC550.02c |cwf5|ecm2|RNA-binding protein Cwf5|Schizosaccharomy... 27 1.2
SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces pombe... 27 1.6
SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 26 2.1
SPAC227.06 |||Rab GTPase binding |Schizosaccharomyces pombe|chr ... 25 4.8
SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4 |Schi... 25 6.3
SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr... 24 8.4
SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr... 24 8.4
SPAC27F1.10 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 24 8.4
SPAC3F10.03 |||glycine tRNA-ligase|Schizosaccharomyces pombe|chr... 24 8.4
>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1427
Score = 27.5 bits (58), Expect = 0.90
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Frame = -2
Query: 309 NYISNFSTFCFFRNWFLQIFMLMFDTCVF--TNVFIVR--FHKVFTT*P 175
++ SN+ FFRN L +L+F +F TN+F+++ FH T P
Sbjct: 6 SFFSNYIDINFFRNATLDQCLLLFYLSLFSLTNLFLIQKLFHANHTQHP 54
>SPCC550.02c |cwf5|ecm2|RNA-binding protein Cwf5|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 354
Score = 27.1 bits (57), Expect = 1.2
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +1
Query: 115 PKDKKIGRLWLKAI*REKSSRLCRKHF 195
PKDKKI L+L + E + RKHF
Sbjct: 206 PKDKKIASLFLIGVEDELADYKIRKHF 232
>SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 871
Score = 26.6 bits (56), Expect = 1.6
Identities = 20/61 (32%), Positives = 28/61 (45%)
Frame = +1
Query: 112 FPKDKKIGRLWLKAI*REKSSRLCRKHFVESDYENISKYTGVKH*HKYLKKPVSEETKSR 291
FP K+ G L + + SS L + +++DY N S T LKK +S E R
Sbjct: 143 FPSSKQEGPSPL--LDNQPSSDLSNFNTIDADYNNASASTSAPATSASLKKVLSAEDSVR 200
Query: 292 E 294
E
Sbjct: 201 E 201
>SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 357
Score = 26.2 bits (55), Expect = 2.1
Identities = 11/33 (33%), Positives = 15/33 (45%)
Frame = -2
Query: 288 TFCFFRNWFLQIFMLMFDTCVFTNVFIVRFHKV 190
TFCFFR W + +L T + +H V
Sbjct: 35 TFCFFRRWKIACTLLCSITVILAYRMCAVYHHV 67
>SPAC227.06 |||Rab GTPase binding |Schizosaccharomyces pombe|chr
1|||Manual
Length = 249
Score = 25.0 bits (52), Expect = 4.8
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +1
Query: 7 SHNIQYLYWNF*LKIILSTMTRYFVPICSEIG 102
SH ++Y+ L I + +TR PIC + G
Sbjct: 190 SHIVKYVLTGIGLLISIVFLTRNLYPICQQAG 221
>SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 865
Score = 24.6 bits (51), Expect = 6.3
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = -1
Query: 112 IDVLQFLSILVQNNASL 62
+ +LQFLSIL QNN +
Sbjct: 275 VKILQFLSILGQNNPKI 291
>SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 877
Score = 24.2 bits (50), Expect = 8.4
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +3
Query: 24 FVLEFLIKNYFKHNDALFCTNMLRN 98
+ + LIK Y K F TN+LR+
Sbjct: 314 YTCQHLIKRYTKFQRVFFLTNVLRS 338
>SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1024
Score = 24.2 bits (50), Expect = 8.4
Identities = 19/72 (26%), Positives = 30/72 (41%)
Frame = -3
Query: 326 DNSFSKIT*VTSLLFVSSETGFFRYLC*CLTPVYLLMFS*SDSTKCLRHNLELFSRQMAF 147
DN I + F S+ F + L L S +D R+N++ S AF
Sbjct: 415 DNGELSINLNKTAFFNDSKPDFRQLFSQTLVESKLQNRSFADIINGSRYNIDRVSPNTAF 474
Query: 146 NHSLPIFLSFGN 111
+ ++P+ L F N
Sbjct: 475 STNIPLSLPFAN 486
>SPAC27F1.10 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 101
Score = 24.2 bits (50), Expect = 8.4
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +2
Query: 122 TRKLEDCG*RPFDAKKVRGYVVNTLWNLTMKTLVNTQ 232
T K E FD+ V GY+VN + + + T + +Q
Sbjct: 65 TEKCEKYNISLFDSTFVFGYIVNCFFIIHLNTFLTSQ 101
>SPAC3F10.03 |||glycine tRNA-ligase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 652
Score = 24.2 bits (50), Expect = 8.4
Identities = 12/43 (27%), Positives = 18/43 (41%)
Frame = +1
Query: 187 KHFVESDYENISKYTGVKH*HKYLKKPVSEETKSREVTYVILE 315
+H VESD I K +H Y + + YV++E
Sbjct: 471 EHTVESDLVTIEKRKHTEHIRTYTPNVIEPSFGLGRILYVLME 513
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,414,050
Number of Sequences: 5004
Number of extensions: 28053
Number of successful extensions: 87
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 148351622
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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