Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_F_N22
(421 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z72502-1|CAA96585.2| 430|Caenorhabditis elegans Hypothetical pr... 30 0.77
U41552-8|AAC69099.2| 771|Caenorhabditis elegans Hypothetical pr... 29 1.4
Z92831-1|CAB07367.1| 332|Caenorhabditis elegans Hypothetical pr... 28 2.4
U22831-4|AAK20066.1| 633|Caenorhabditis elegans Hypothetical pr... 27 4.1
U14635-5|AAN63442.1| 464|Caenorhabditis elegans Hypothetical pr... 26 9.5
U14635-4|AAL02446.1| 459|Caenorhabditis elegans Hypothetical pr... 26 9.5
U14635-3|AAN63441.1| 491|Caenorhabditis elegans Hypothetical pr... 26 9.5
U14635-2|AAC46656.2| 522|Caenorhabditis elegans Hypothetical pr... 26 9.5
AL021386-2|CAA16165.1| 240|Caenorhabditis elegans Hypothetical ... 26 9.5
AC006618-3|AAK68251.3| 960|Caenorhabditis elegans Patched relat... 26 9.5
>Z72502-1|CAA96585.2| 430|Caenorhabditis elegans Hypothetical
protein C08B6.2 protein.
Length = 430
Score = 29.9 bits (64), Expect = 0.77
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = +3
Query: 42 IKNYF-KHNDALFCTNMLRNWSTSIPEGQENWKTVVKGHL 158
I YF K +++ FC + L+N + SI E ++N+K + L
Sbjct: 5 IFQYFRKRSNSKFCGSFLQNVTESIRENEQNYKKTINNKL 44
>U41552-8|AAC69099.2| 771|Caenorhabditis elegans Hypothetical
protein K07E3.2 protein.
Length = 771
Score = 29.1 bits (62), Expect = 1.4
Identities = 12/23 (52%), Positives = 15/23 (65%), Gaps = 2/23 (8%)
Frame = +3
Query: 75 FCTNMLRN--WSTSIPEGQENWK 137
F T +LRN W+ +I EG E WK
Sbjct: 496 FATRLLRNCLWTAAIKEGTEGWK 518
>Z92831-1|CAB07367.1| 332|Caenorhabditis elegans Hypothetical
protein F22G12.3 protein.
Length = 332
Score = 28.3 bits (60), Expect = 2.4
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = +3
Query: 15 HSIFVLEFLIKNYFKHNDALFCTNMLRNWSTSIPEGQENWK 137
+ ++++ F IK Y+ D L C N R T++ + +WK
Sbjct: 79 YDVWIISFGIKRYYP--DTLSCMNYYRLLQTNLEDKTADWK 117
>U22831-4|AAK20066.1| 633|Caenorhabditis elegans Hypothetical
protein F47D12.5 protein.
Length = 633
Score = 27.5 bits (58), Expect = 4.1
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -1
Query: 103 LQFLSILVQNNASLCLK*FLIKNSNTNIECYGN 5
L L+ + QN+A C K + N +EC+GN
Sbjct: 438 LDILTQITQNSADACEKLAECEEMNVLLECFGN 470
>U14635-5|AAN63442.1| 464|Caenorhabditis elegans Hypothetical
protein C27H5.2d protein.
Length = 464
Score = 26.2 bits (55), Expect = 9.5
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +3
Query: 42 IKNYFKH-NDALFCTNMLRNWSTSIPEGQENWKTV 143
++ F H +D L C N NW+ + E Q++W V
Sbjct: 386 LERRFAHVDDELACVN--ENWAKELKEKQQDWDKV 418
>U14635-4|AAL02446.1| 459|Caenorhabditis elegans Hypothetical
protein C27H5.2b protein.
Length = 459
Score = 26.2 bits (55), Expect = 9.5
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +3
Query: 42 IKNYFKH-NDALFCTNMLRNWSTSIPEGQENWKTV 143
++ F H +D L C N NW+ + E Q++W V
Sbjct: 386 LERRFAHVDDELACVN--ENWAKELKEKQQDWDKV 418
>U14635-3|AAN63441.1| 491|Caenorhabditis elegans Hypothetical
protein C27H5.2c protein.
Length = 491
Score = 26.2 bits (55), Expect = 9.5
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +3
Query: 42 IKNYFKH-NDALFCTNMLRNWSTSIPEGQENWKTV 143
++ F H +D L C N NW+ + E Q++W V
Sbjct: 386 LERRFAHVDDELACVN--ENWAKELKEKQQDWDKV 418
>U14635-2|AAC46656.2| 522|Caenorhabditis elegans Hypothetical
protein C27H5.2a protein.
Length = 522
Score = 26.2 bits (55), Expect = 9.5
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +3
Query: 42 IKNYFKH-NDALFCTNMLRNWSTSIPEGQENWKTV 143
++ F H +D L C N NW+ + E Q++W V
Sbjct: 386 LERRFAHVDDELACVN--ENWAKELKEKQQDWDKV 418
>AL021386-2|CAA16165.1| 240|Caenorhabditis elegans Hypothetical
protein F57E7.2 protein.
Length = 240
Score = 26.2 bits (55), Expect = 9.5
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = +2
Query: 74 ILYQYAQKLEYINSRRTRKLEDCG*RPFDAKKVRGYVVNTLWNLTMK-TLVNTQ 232
+LY++ K YIN + +E+ D +K+R N W L K T NTQ
Sbjct: 133 LLYKFKAKKNYINYLCSTAIEEGIFNKADTEKIR----NNYWKLQYKYTYPNTQ 182
>AC006618-3|AAK68251.3| 960|Caenorhabditis elegans Patched related
family protein 4 protein.
Length = 960
Score = 26.2 bits (55), Expect = 9.5
Identities = 10/29 (34%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = -2
Query: 303 ISNFSTF-CFFRNWFLQIFMLMFDTCVFT 220
+++F+ F CFF WF+ + D C+ T
Sbjct: 451 VTSFTNFFCFFLGWFMCSTPAVADFCIIT 479
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,649,064
Number of Sequences: 27780
Number of extensions: 153304
Number of successful extensions: 419
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 417
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 419
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 682028672
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -