Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_F_N15
(857 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC4.06 |||acid phosphatase |Schizosaccharomyces pombe|chr 2|||... 36 0.006
SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyce... 29 0.64
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch... 29 0.84
SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces ... 29 1.1
SPAC1B9.02c |sck1||serine/threonine protein kinase Sck1|Schizosa... 27 4.5
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 26 7.9
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb... 26 7.9
SPBC9B6.03 |||zinc finger protein|Schizosaccharomyces pombe|chr ... 26 7.9
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca... 26 7.9
SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78 |Schizosacch... 26 7.9
>SPBC4.06 |||acid phosphatase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 462
Score = 36.3 bits (80), Expect = 0.006
Identities = 34/110 (30%), Positives = 49/110 (44%), Gaps = 9/110 (8%)
Frame = +1
Query: 340 LTNMGKRRACSVGKYLRKNYDGFLSRLYLPDE------IVIRTTDYDRTKMTALTAMAGL 501
LT+ G+ ++G+YLR+ Y L +LPDE + +R T R + +GL
Sbjct: 108 LTDFGRVTTRTLGEYLRERYVKQLK--FLPDELNNYADVYMRATPMVRALESLEHVFSGL 165
Query: 502 YPPEPEQRWNP---TLNWQPVPYNTPPRDEDDLLYYYNCPRYIALRDETA 642
YP + P T NW DE+ L NCPR + L +E A
Sbjct: 166 YPESKRKMGLPVIFTRNWS---------DENLLPNENNCPRLVQLYEEFA 206
>SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 533
Score = 29.5 bits (63), Expect = 0.64
Identities = 29/121 (23%), Positives = 49/121 (40%), Gaps = 4/121 (3%)
Frame = +1
Query: 505 PPEPEQRWNPTLNWQPV---PYNTPPRDEDDLLYYYNCPRYIALRDETASLPEIQDLLAP 675
PP Q + ++ V P+N P E + Y+ + I+L D + L+P
Sbjct: 64 PPSHLQNFQDQFDYSSVLKTPFN--PLLEANSAYFLS--NQISLPDSHSYASSFDASLSP 119
Query: 676 YKDLFQYLEQ-HTKTNITTSEDVFYLDNLFQTLXNVGVETPKWAQEVMPQIKXVTKIEYA 852
+ Q HT+ N + D F L N Q +G + W E+ Q + ++ E+
Sbjct: 120 PSSPLTCVSQIHTEQNFNNN-DAFSLTNSQQAFSEIGYDASNWIDELDSQQQVLSFPEFD 178
Query: 853 I 855
I
Sbjct: 179 I 179
>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
Mok12|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2352
Score = 29.1 bits (62), Expect = 0.84
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -2
Query: 709 CAVLNIERGLCTAPINLGFPAN*LFHLLVQY 617
C++ NIE+ +CT + G N L H ++ Y
Sbjct: 1350 CSIFNIEKDICTKYVQFGHVFN-LLHSIISY 1379
>SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 905
Score = 28.7 bits (61), Expect = 1.1
Identities = 12/16 (75%), Positives = 13/16 (81%)
Frame = -2
Query: 268 LDPVYGRHDEIPRTLR 221
LDPV GR DEI RT+R
Sbjct: 180 LDPVIGREDEIRRTIR 195
>SPAC1B9.02c |sck1||serine/threonine protein kinase
Sck1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 696
Score = 26.6 bits (56), Expect = 4.5
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +2
Query: 320 TLTD*RH*QIWVNVEPVQSGNISERTMMDSFRGYTY 427
T T+ ++ I NV+P + T+ D FRG+T+
Sbjct: 598 TNTNVKNINIVSNVDPANASTPLSNTIQDRFRGFTF 633
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 25.8 bits (54), Expect = 7.9
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -2
Query: 685 GLCTAPINLGFPAN*LFHLLVQYNEGSCSNIVS 587
GL + +N P N H+L QYN+G I++
Sbjct: 284 GLKSLVLNSELPVNSRLHILEQYNKGLYQIIIA 316
>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1428
Score = 25.8 bits (54), Expect = 7.9
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +3
Query: 96 HETILDCMVSVSR*LVLRKYAHEKARRAE 182
HE ILDC+ V + LR+ EK RRA+
Sbjct: 1344 HEIILDCVAFVPKGTFLRRPTGEK-RRAD 1371
>SPBC9B6.03 |||zinc finger protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 293
Score = 25.8 bits (54), Expect = 7.9
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = +2
Query: 14 RKRSANARTNVPLIT-KLAKSTRLHTYQA*NYS 109
R S N R + P + KLA S+R +YQA +YS
Sbjct: 90 RSYSGNPRLSKPYASSKLAASSRTASYQAMSYS 122
>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 2410
Score = 25.8 bits (54), Expect = 7.9
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -2
Query: 709 CAVLNIERGLCTAPINLGFPAN*LFHLLVQY 617
CAV NI + +CT + G N L H V Y
Sbjct: 1322 CAVYNISQRVCTKYVQFGNVFN-LLHAAVSY 1351
>SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 803
Score = 25.8 bits (54), Expect = 7.9
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = -2
Query: 268 LDPVYGRHDEIPRTLR 221
LDPV GR +EI RT++
Sbjct: 110 LDPVIGREEEIQRTIQ 125
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,646,880
Number of Sequences: 5004
Number of extensions: 80314
Number of successful extensions: 208
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 208
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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