Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_N13
         (787 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024843-9|AAF60836.1|  263|Caenorhabditis elegans Hypothetical ...    31   0.71 
AF047655-5|AAC04399.1|  820|Caenorhabditis elegans Hypothetical ...    30   1.6  
Z70203-2|CAA94105.1|  685|Caenorhabditis elegans Hypothetical pr...    29   3.8  
AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical ...    29   5.0  
U00040-4|AAM22034.1| 1139|Caenorhabditis elegans Hypothetical pr...    28   6.6  
AF016427-10|AAB65348.1|  301|Caenorhabditis elegans Hypothetical...    28   6.6  

>AC024843-9|AAF60836.1|  263|Caenorhabditis elegans Hypothetical
           protein Y61A9LA.9 protein.
          Length = 263

 Score = 31.5 bits (68), Expect = 0.71
 Identities = 17/53 (32%), Positives = 25/53 (47%)
 Frame = -3

Query: 413 ASPSRPAEIMPLSQRTQKPRYSPPLRIPGLSISTLSGLVLFFLMTLLAFPQPP 255
           A+PS P  I     +T+KP  S P +I   S +  +  +  F  TL + P  P
Sbjct: 186 ANPSLPVHIQTFRVKTRKPVLSRPTKIRFSSEADRNSFIFSFSKTLRSLPDRP 238


>AF047655-5|AAC04399.1|  820|Caenorhabditis elegans Hypothetical
           protein C17B7.5 protein.
          Length = 820

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 16/65 (24%), Positives = 33/65 (50%)
 Frame = +3

Query: 99  NVMDVATDDNLQYQFFPXFKWISSVQSQSSE*CPHRAHDRPARIGSYV*GDDWRLGKR*E 278
           N MD+ T+ +LQ++  P  K+   ++  ++    H    +   +GS+     WRL +R E
Sbjct: 388 NCMDIPTNGSLQFEKPPFDKFFIGIKMLNNMTTNHTNLPKIDNVGSFNVNGHWRLIRRRE 447

Query: 279 RHQEK 293
           + + +
Sbjct: 448 KFERQ 452


>Z70203-2|CAA94105.1|  685|Caenorhabditis elegans Hypothetical
           protein C05G5.2 protein.
          Length = 685

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 19/70 (27%), Positives = 29/70 (41%)
 Frame = -2

Query: 540 PVRSIEFRSIFDFPGACGTPACADSDVVNWERFRIRPGYEWNSFTLASSGDNAAIPTNPK 361
           P+  +      D P    TP    + V+    F+ +P  +       S  D  ++PT PK
Sbjct: 513 PIEPVVVPKAVDIPAPKPTPVTNTTAVIPKVEFK-KPAAKSLFDDSDSDSDLFSLPTKPK 571

Query: 360 TTIFPSVKNS 331
           T I P  +NS
Sbjct: 572 TPIAPKNRNS 581


>AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical
           protein F21E9.1 protein.
          Length = 1170

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 18/63 (28%), Positives = 35/63 (55%)
 Frame = -2

Query: 417 NSFTLASSGDNAAIPTNPKTTIFPSVKNSGAFNFNLIGLGSIFPDDALSVSPASNHHLIH 238
           +S  L+S   N +  + P+T+    +  S +F+F+L       P  +L +SP  ++H+IH
Sbjct: 261 SSLLLSSINSNLSHNSIPQTSP-KRISQSSSFSFSL-------PPSSLPLSPKIDNHVIH 312

Query: 237 RIR 229
           +I+
Sbjct: 313 KIK 315


>U00040-4|AAM22034.1| 1139|Caenorhabditis elegans Hypothetical protein
            C18H2.5 protein.
          Length = 1139

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = +3

Query: 108  DVATDDNLQYQFFPXFKWISSVQSQSS 188
            D +TDD L  QF   FK I+S + QSS
Sbjct: 921  DKSTDDKLTNQFMEVFKSIASNEPQSS 947


>AF016427-10|AAB65348.1|  301|Caenorhabditis elegans Hypothetical
           protein F32D1.7 protein.
          Length = 301

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -3

Query: 452 GKGSGSDQDMNGIASPSRPAEIMPLSQRTQKPRYSP 345
           G GSGS  D +G + P+R +  +P +     PR  P
Sbjct: 159 GSGSGSGNDSSGSSGPTRMSGQVPSTSGPPPPRPPP 194


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,371,339
Number of Sequences: 27780
Number of extensions: 417305
Number of successful extensions: 1115
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1050
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1115
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1903721438
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)