Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_N11
         (863 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L15314-5|AAK18968.1|  236|Caenorhabditis elegans Isopentenyl dip...   113   1e-25
AY597336-1|AAT08468.1|  236|Caenorhabditis elegans isopentenyl-d...   113   1e-25
Z81132-11|CAB03426.2|  302|Caenorhabditis elegans Hypothetical p...    29   4.3  
U23511-6|ABD63239.1|  116|Caenorhabditis elegans Hypothetical pr...    28   7.5  

>L15314-5|AAK18968.1|  236|Caenorhabditis elegans Isopentenyl
           diphosphate isomeraseprotein 1 protein.
          Length = 236

 Score =  113 bits (273), Expect = 1e-25
 Identities = 68/215 (31%), Positives = 106/215 (49%), Gaps = 7/215 (3%)
 Frame = +1

Query: 238 AQAEALDKDICLLVDEKDNFIGTATKRECHKVGPDGDVLLHRAFSVFLFNKRGDMFLQRR 417
           AQ     ++ C+ VDE D  IG  +KRE H       ++LHRAFSVF F     + +Q+R
Sbjct: 25  AQQVEYMREQCINVDENDRIIGGVSKREAHS---SYQLVLHRAFSVFSFTSDNKLLMQKR 81

Query: 418 SSQKVTYPDYYTNACCSHPLYIDEKPEEIITAAR---RRMNHELGIPLDQLDPELFTFMT 588
           S++K+T+P+ +TN CCSHPL+  ++ + +  A R   R++ HELGI    L+   F    
Sbjct: 82  SAEKITFPNLWTNTCCSHPLHTQQEMDGVPGAKRAAIRKLEHELGITGVSLNK--FQMAG 139

Query: 589 RVHYH-DPGDGVWGEHEIDHILFFQ--SDVKVKPNSDEISEYCFVPKAEFNSFLPTLEGP 759
           +  Y  +  +  WGEHE+D+ L  +         N +E++E   V   E   ++      
Sbjct: 140 KYIYRAEMNNAPWGEHELDYALILRGIGAENCNINENEVAEVREVVLDELKLWMRKEPNS 199

Query: 760 ITPWFNMI-RRHRLKLWWDNLHRIKELAEPXKIQK 861
            TPW  +  +    + WW      +E  E   I K
Sbjct: 200 FTPWLKLFSQTETFEKWWTINKNTEESIEDTNIYK 234


>AY597336-1|AAT08468.1|  236|Caenorhabditis elegans
           isopentenyl-diphosphate isomerase protein.
          Length = 236

 Score =  113 bits (273), Expect = 1e-25
 Identities = 68/215 (31%), Positives = 106/215 (49%), Gaps = 7/215 (3%)
 Frame = +1

Query: 238 AQAEALDKDICLLVDEKDNFIGTATKRECHKVGPDGDVLLHRAFSVFLFNKRGDMFLQRR 417
           AQ     ++ C+ VDE D  IG  +KRE H       ++LHRAFSVF F     + +Q+R
Sbjct: 25  AQQVEYMREQCINVDENDRIIGGVSKREAHS---SYQLVLHRAFSVFSFTSDNKLLMQKR 81

Query: 418 SSQKVTYPDYYTNACCSHPLYIDEKPEEIITAAR---RRMNHELGIPLDQLDPELFTFMT 588
           S++K+T+P+ +TN CCSHPL+  ++ + +  A R   R++ HELGI    L+   F    
Sbjct: 82  SAEKITFPNLWTNTCCSHPLHTQQEMDGVPGAKRAAIRKLEHELGITGVSLNK--FQMAG 139

Query: 589 RVHYH-DPGDGVWGEHEIDHILFFQ--SDVKVKPNSDEISEYCFVPKAEFNSFLPTLEGP 759
           +  Y  +  +  WGEHE+D+ L  +         N +E++E   V   E   ++      
Sbjct: 140 KYIYRAEMNNAPWGEHELDYALILRGIGAENCNINENEVAEVREVVLDELKLWMRKEPNS 199

Query: 760 ITPWFNMI-RRHRLKLWWDNLHRIKELAEPXKIQK 861
            TPW  +  +    + WW      +E  E   I K
Sbjct: 200 FTPWLKLFSQTETFEKWWTINKNTEESIEDTNIYK 234


>Z81132-11|CAB03426.2|  302|Caenorhabditis elegans Hypothetical
           protein T26E4.15 protein.
          Length = 302

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -1

Query: 212 VAGFTGSEAKNLFSTLRVLHSDLVSFLTNIFVCM 111
           + GFTG    NLF  L  LHS+ +  + NI +C+
Sbjct: 17  IVGFTG----NLFMVLVTLHSNKLRSICNILICV 46


>U23511-6|ABD63239.1|  116|Caenorhabditis elegans Hypothetical
           protein C32D5.14 protein.
          Length = 116

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
 Frame = -1

Query: 164 RVLHSDL--VSFLTNIFVCMNFTELHFYI 84
           R+  SD+  + F T I +C+NF + HF I
Sbjct: 68  RIRRSDINSIKFQTKILICLNFRKGHFLI 96


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,879,133
Number of Sequences: 27780
Number of extensions: 463743
Number of successful extensions: 1229
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1223
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2160943708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)