Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_N09
         (848 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1620.05 |||Rab geranylgeranyltransferase |Schizosaccharomyce...    90   4e-19
SPAPB1A10.04c |cwp1||geranylgeranyltransferase I alpha subunit C...    55   1e-08
SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor Crm1|...    28   1.9  
SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27 family|Schi...    27   3.4  
SPCC1183.04c |pet127||mitochondrial membrane protein Pet127|Schi...    27   4.4  
SPBC418.02 |||NatA N-acetyltransferase complex subunit |Schizosa...    27   4.4  
SPAC328.03 |tps1||alpha,alpha-trehalose-phosphate synthase [UDP-...    26   5.9  

>SPCC1620.05 |||Rab geranylgeranyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 344

 Score = 89.8 bits (213), Expect = 4e-19
 Identities = 49/156 (31%), Positives = 74/156 (47%)
 Frame = +3

Query: 366 MHGRVKVRTSXXXXXXXXXXXXXXXXIFKHAMQKIQIKRKECTLDKELLELTGNVLSSNP 545
           MHG ++V+ S                 ++  + + Q  RK     +  L+LT  +L  NP
Sbjct: 1   MHGILRVKLSEEQRKLKAEKERAKIEEYRGLVSRFQEARKRKDYSEGNLKLTTELLDWNP 60

Query: 546 DIYTLWNIRREILQLFKKSNDNIEEMSQVYNAELHLTEYCLKINPKSYCAWHQREWVLLT 725
           + Y++WN RREIL        ++ E   + + EL      +K+ PK Y  ++ R W L  
Sbjct: 61  ETYSVWNYRREILLNDVFPKISLNEKQDLLDNELKYVLSKMKVFPKVYWIFNHRRWCLEN 120

Query: 726 RDDPDWQKELELCNTYLKLDERNFHTWDYRRFVVSQ 833
              P+W  E+ +    L  D RNFH W YRR+VVSQ
Sbjct: 121 APYPNWNYEMMITEKLLSADARNFHGWHYRRYVVSQ 156



 Score = 31.1 bits (67), Expect = 0.21
 Identities = 26/123 (21%), Positives = 54/123 (43%), Gaps = 13/123 (10%)
 Frame = +3

Query: 516 LTGNVLSSNPDIYTLWNIRREILQLFKKSNDNIEEMSQVYNAELHLTEYCLKINPKSYCA 695
           +T  +LS++   +  W+ RR ++   +++ +       +   E+  T   +  N  ++ A
Sbjct: 132 ITEKLLSADARNFHGWHYRRYVVSQIERAGN-----CSLAKKEMEYTTSAIATNFSNFSA 186

Query: 696 WHQR----EWVLLTRDDPDWQK---------ELELCNTYLKLDERNFHTWDYRRFVVSQC 836
            H R    E +L    DP+ QK         EL++ +  +  D  +   W Y R+++  C
Sbjct: 187 LHNRTKLIETILNLEADPNSQKALAKQILEQELDMIHQAVFTDPDDSSVWIYHRWLMGHC 246

Query: 837 XPS 845
            P+
Sbjct: 247 NPN 249


>SPAPB1A10.04c |cwp1||geranylgeranyltransferase I alpha subunit
           Cwp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 294

 Score = 55.2 bits (127), Expect = 1e-08
 Identities = 36/117 (30%), Positives = 60/117 (51%), Gaps = 1/117 (0%)
 Frame = +3

Query: 480 RKECTLDKELLELTGNVLSSNPDIYTLWNIRREILQLFKKSNDNIEEMSQVYNAELHLTE 659
           +KE +L    L LTG ++ +NP  YT+W  R +IL       DN          EL   +
Sbjct: 54  KKEYSL--RALNLTGFLIMNNPAHYTVWAYRFQILNHTPSYIDN----------ELEWLD 101

Query: 660 YCLKINPKSYCAWHQREWVL-LTRDDPDWQKELELCNTYLKLDERNFHTWDYRRFVV 827
              +   K+Y  WH R+ +L LT++   +++ELE      ++D +N+H W YR +++
Sbjct: 102 EIAEDFQKNYQVWHHRQKILSLTKN---YERELEFTKKMFEIDSKNYHVWSYRVWIL 155



 Score = 48.8 bits (111), Expect = 1e-06
 Identities = 33/111 (29%), Positives = 54/111 (48%)
 Frame = +3

Query: 495 LDKELLELTGNVLSSNPDIYTLWNIRREILQLFKKSNDNIEEMSQVYNAELHLTEYCLKI 674
           +D EL E    +       Y +W+ R++IL L K            Y  EL  T+   +I
Sbjct: 93  IDNEL-EWLDEIAEDFQKNYQVWHHRQKILSLTKN-----------YERELEFTKKMFEI 140

Query: 675 NPKSYCAWHQREWVLLTRDDPDWQKELELCNTYLKLDERNFHTWDYRRFVV 827
           + K+Y  W  R W+L  ++  D+ +EL+L N  L+ D  N   W++R +V+
Sbjct: 141 DSKNYHVWSYRVWIL--QNFNDYSQELKLTNELLEKDIYNNSAWNHRFYVL 189


>SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor
           Crm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1078

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 16/65 (24%), Positives = 31/65 (47%)
 Frame = +3

Query: 444 IFKHAMQKIQIKRKECTLDKELLELTGNVLSSNPDIYTLWNIRREILQLFKKSNDNIEEM 623
           I K+ +  + + +    L  E++   GN+ +  P +  L  I++EIL+L        E++
Sbjct: 711 IAKNYVDMLGLYKAVSGLISEVVAAQGNIATKTPHVRGLRTIKKEILKLVDAYISRAEDL 770

Query: 624 SQVYN 638
             V N
Sbjct: 771 ELVGN 775


>SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 817

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 14/61 (22%), Positives = 25/61 (40%)
 Frame = +3

Query: 627 QVYNAELHLTEYCLKINPKSYCAWHQREWVLLTRDDPDWQKELELCNTYLKLDERNFHTW 806
           Q Y+A +     CL INP+   +W+     +L   D   ++        +K    N+  W
Sbjct: 569 QKYDAAMEAFSRCLSINPEDGESWNNLASAMLKAKDHTKEQAWHAMQQGIKYMYDNWRIW 628

Query: 807 D 809
           +
Sbjct: 629 E 629


>SPCC1183.04c |pet127||mitochondrial membrane protein
           Pet127|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 524

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -1

Query: 464 LHGMFENLQFFISLFLFPGFLFLRSSDFHSP 372
           L G+   L FFIS + FP F  L    + SP
Sbjct: 134 LTGLMSQLHFFISKWKFPNFSDLSKGFYISP 164


>SPBC418.02 |||NatA N-acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 13/49 (26%), Positives = 20/49 (40%)
 Frame = +3

Query: 660 YCLKINPKSYCAWHQREWVLLTRDDPDWQKELELCNTYLKLDERNFHTW 806
           Y   I+PKS   WH     ++ R+  D+   L+     L +   N   W
Sbjct: 67  YASSIDPKSQFCWH--ALAIVYRETKDYNNSLKCYQNALAISPNNESLW 113


>SPAC328.03 |tps1||alpha,alpha-trehalose-phosphate synthase
           [UDP-forming]|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +3

Query: 756 ELCNTYLKLDERNFHTWDYRRFVVSQC 836
           E+    L  D   FHT+DY R  +S C
Sbjct: 203 EILEGVLNCDLVGFHTYDYARHFLSAC 229


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,335,269
Number of Sequences: 5004
Number of extensions: 66755
Number of successful extensions: 174
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)