Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_F_N09
(848 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1119 + 27760412-27760527,27760851-27761010,27761283-277614... 88 1e-17
09_04_0722 + 19729331-19729582,19730535-19730644,19730810-197309... 62 4e-10
01_06_0285 + 28183108-28183209,28183495-28183754,28183950-281842... 38 0.008
01_06_0287 + 28224956-28225216,28225385-28225641,28225789-282258... 31 0.88
05_01_0038 + 260080-260380,260852-261022,261764-261810,262266-26... 31 1.5
03_05_0820 + 27951971-27954236,27954746-27955008,27955169-279552... 29 6.2
05_06_0096 + 25513535-25514024,25514139-25514236,25514395-255147... 28 8.2
>06_03_1119 +
27760412-27760527,27760851-27761010,27761283-27761449,
27761525-27761629,27762097-27762864,27762942-27763131,
27763763-27763940,27764106-27764497
Length = 691
Score = 87.8 bits (208), Expect = 1e-17
Identities = 45/112 (40%), Positives = 63/112 (56%), Gaps = 1/112 (0%)
Frame = +3
Query: 492 TLDKELLELTGNVLSSNPDIYTLWNIRREILQLFKKSNDNIEEMSQVYNAELHLTEYCLK 671
T KE L L+ +L NP+ YT WN R+ Q E + + EL + E L+
Sbjct: 39 TYTKEALGLSFKLLEINPEAYTAWNYRKLAFQHNIGELSEPEAIKSAIDDELRVVEVALR 98
Query: 672 INPKSYCAWHQREWVLLTRDDP-DWQKELELCNTYLKLDERNFHTWDYRRFV 824
NPKSY AW+ R+W+L + P D++ E L + LK+D RNFH W+YRRF+
Sbjct: 99 QNPKSYGAWYHRKWLLNQKLAPVDFKCEFGLLDKLLKVDARNFHGWNYRRFL 150
>09_04_0722 +
19729331-19729582,19730535-19730644,19730810-19730930,
19731080-19731175,19731429-19731838,19732251-19732309,
19733235-19733287,19733432-19733485
Length = 384
Score = 62.5 bits (145), Expect = 4e-10
Identities = 34/107 (31%), Positives = 52/107 (48%), Gaps = 1/107 (0%)
Frame = +3
Query: 510 LELTGNVLSSNPDIYTLWNIRREILQLFKKSNDNIEEMSQVYNAELHLTEYCLKINPKSY 689
L LT V+ NP YT+W+ RR +L E + E+ + + NPK+Y
Sbjct: 69 LHLTAEVIDLNPGNYTVWHFRRLVL----------EALDADLREEMDFVDRIAECNPKNY 118
Query: 690 CAWHQREWVLLTRDDPD-WQKELELCNTYLKLDERNFHTWDYRRFVV 827
WH + W L + PD KE E L +D +N+H W +R++V+
Sbjct: 119 QIWHHKRW-LAEKLGPDIANKEHEFTRKILSMDAKNYHAWSHRQWVL 164
Score = 52.4 bits (120), Expect = 4e-07
Identities = 31/110 (28%), Positives = 51/110 (46%)
Frame = +3
Query: 501 KELLELTGNVLSSNPDIYTLWNIRREILQLFKKSNDNIEEMSQVYNAELHLTEYCLKINP 680
+E ++ + NP Y +W+ +R + + K D + N E T L ++
Sbjct: 101 REEMDFVDRIAECNPKNYQIWHHKRWLAE--KLGPD-------IANKEHEFTRKILSMDA 151
Query: 681 KSYCAWHQREWVLLTRDDPDWQKELELCNTYLKLDERNFHTWDYRRFVVS 830
K+Y AW R+WVL W+ EL+ CN L+ D N W+ R V++
Sbjct: 152 KNYHAWSHRQWVLQALGG--WETELQYCNQLLEEDVFNNSAWNQRYLVIT 199
>01_06_0285 +
28183108-28183209,28183495-28183754,28183950-28184237,
28184385-28184495,28184815-28184905,28185146-28185214,
28185627-28185716,28185887-28185937,28186040-28186258,
28186371-28186490
Length = 466
Score = 38.3 bits (85), Expect = 0.008
Identities = 28/132 (21%), Positives = 60/132 (45%), Gaps = 6/132 (4%)
Frame = +3
Query: 450 KHAMQKIQIKRKECTLDKELLELTGNVLSSNPDIYTLWNIRREILQLFKKSNDNIEEMSQ 629
+HA + ++ +L+ + +L PD+ T WN R+ +L + N + ++
Sbjct: 177 QHAYSNSAAAKDGSFMETDLMRHSKALLILCPDMLTAWNSRKIVLSV----NYDFTKLKD 232
Query: 630 VYNAELHLTEYCLKINPKSYCAWHQREWVL--LTRDDPDWQKELELCNTYLK----LDER 791
EL L L +PK+ W R WV+ ++ + D + +E+ + +K +
Sbjct: 233 ----ELQLCALILSYSPKNESTWSHRRWVIKKVSEHNQDVSELIEMESVLVKQIAEKSKM 288
Query: 792 NFHTWDYRRFVV 827
N+ W +R +++
Sbjct: 289 NYRAWRHRCWLI 300
Score = 36.3 bits (80), Expect = 0.031
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = +3
Query: 678 PKSYCAWHQREWVL-LTRDDPDWQKELELCNTYLKLDERNFHTWDYRRFVVSQ 833
P AW+ R+ VL + D + EL+LC L +N TW +RR+V+ +
Sbjct: 208 PDMLTAWNSRKIVLSVNYDFTKLKDELQLCALILSYSPKNESTWSHRRWVIKK 260
>01_06_0287 +
28224956-28225216,28225385-28225641,28225789-28225899,
28225926-28226021,28226078-28226134,28226348-28226438,
28226610-28226678,28227091-28227180,28227390-28227440,
28227535-28227753,28228064-28228127,28228211-28228299
Length = 484
Score = 31.5 bits (68), Expect = 0.88
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = +3
Query: 678 PKSYCAWHQREWVL-LTRDDPDWQKELELCNTYLKLDERNFHTWDYR 815
P AW+ R+ VL + D + EL+LC L +N TW +R
Sbjct: 164 PDMLTAWNSRKMVLSVNYDFTKLKDELQLCALILSCSPKNESTWSHR 210
>05_01_0038 +
260080-260380,260852-261022,261764-261810,262266-262412,
262495-262569,262826-262935,263032-263159,263368-263429,
263599-263748,263827-263861,264083-264151,264538-264629,
264718-264794,265434-265532
Length = 520
Score = 30.7 bits (66), Expect = 1.5
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Frame = +3
Query: 510 LELTGNVLSSNPDIYTLWN--IRREILQLFKKSNDN-IEEMSQVYNAELHLTEYC 665
L+LTGN+LS DI++L EIL L + +N + S V N + + YC
Sbjct: 162 LDLTGNLLSQWQDIFSLCEALASLEILDLTNNTMENDFTDSSSVKNIRVLVLNYC 216
>03_05_0820 +
27951971-27954236,27954746-27955008,27955169-27955288,
27957790-27957856,27958310-27958515
Length = 973
Score = 28.7 bits (61), Expect = 6.2
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = -3
Query: 237 QQTFFKIVFTN*SSDYKLTMLNYFSLMLLIVTDTKAKFHYVCLV 106
+QTF I+F S ++YF +M KAK HY C+V
Sbjct: 611 EQTFLAILFACSHSGLVEHAMHYFEMMQACGISPKAK-HYTCMV 653
>05_06_0096 +
25513535-25514024,25514139-25514236,25514395-25514783,
25515485-25515599,25515816-25515917,25516584-25516734,
25517162-25517250,25517518-25517566,25517723-25517763,
25517929-25518116,25518285-25518402,25518900-25519079,
25519172-25519294,25519368-25519455,25519549-25519679,
25519768-25519866,25520822-25521253
Length = 960
Score = 28.3 bits (60), Expect = 8.2
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +3
Query: 756 ELCNTYLKLDERNFHTWDYRRFVVSQC 836
EL + L D FHT+DY R VS C
Sbjct: 314 ELLRSVLCADLVGFHTYDYARHFVSAC 340
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,442,295
Number of Sequences: 37544
Number of extensions: 348213
Number of successful extensions: 692
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 662
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 681
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2362209084
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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