Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_F_N09
(848 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Y08200-1|CAA69382.1| 567|Homo sapiens rab geranylgeranyl transf... 155 2e-37
CR541797-1|CAG46596.1| 567|Homo sapiens RABGGTA protein. 155 2e-37
BC003093-1|AAH03093.1| 567|Homo sapiens Rab geranylgeranyltrans... 155 2e-37
L10413-1|AAA86285.1| 379|Homo sapiens farnesyl-protein transfer... 54 5e-07
L00634-1|AAA35853.1| 379|Homo sapiens farnesyl-protein transfer... 54 5e-07
BT009854-1|AAP88856.1| 379|Homo sapiens farnesyltransferase, CA... 54 5e-07
BC084566-1|AAH84566.1| 379|Homo sapiens farnesyltransferase, CA... 54 5e-07
BC037295-1|AAH37295.1| 214|Homo sapiens FNTA protein protein. 54 5e-07
BC017029-1|AAH17029.2| 376|Homo sapiens FNTA protein protein. 54 5e-07
BC053622-1|AAH53622.1| 403|Homo sapiens PTAR1 protein protein. 43 0.002
AL162412-2|CAI10945.2| 312|Homo sapiens protein prenyltransfera... 43 0.002
>Y08200-1|CAA69382.1| 567|Homo sapiens rab geranylgeranyl
transferase protein.
Length = 567
Score = 155 bits (376), Expect = 2e-37
Identities = 71/156 (45%), Positives = 99/156 (63%)
Frame = +3
Query: 366 MHGRVKVRTSXXXXXXXXXXXXXXXXIFKHAMQKIQIKRKECTLDKELLELTGNVLSSNP 545
MHGR+KV+TS +++ A Q + KR+ LD+ +LELT +L +NP
Sbjct: 1 MHGRLKVKTSEEQAEAKRLEREQKLKLYQSATQAVFQKRQAGELDESVLELTSQILGANP 60
Query: 546 DIYTLWNIRREILQLFKKSNDNIEEMSQVYNAELHLTEYCLKINPKSYCAWHQREWVLLT 725
D TLWN RRE+LQ + + + EE++ + AEL E CL++NPKSY WH R W+L
Sbjct: 61 DFATLWNCRREVLQQLE-TQKSPEELAALVKAELGFLESCLRVNPKSYGTWHHRCWLLGR 119
Query: 726 RDDPDWQKELELCNTYLKLDERNFHTWDYRRFVVSQ 833
+P+W +ELELC +L++DERNFH WDYRRFV +Q
Sbjct: 120 LPEPNWTRELELCARFLEVDERNFHCWDYRRFVATQ 155
>CR541797-1|CAG46596.1| 567|Homo sapiens RABGGTA protein.
Length = 567
Score = 155 bits (376), Expect = 2e-37
Identities = 71/156 (45%), Positives = 99/156 (63%)
Frame = +3
Query: 366 MHGRVKVRTSXXXXXXXXXXXXXXXXIFKHAMQKIQIKRKECTLDKELLELTGNVLSSNP 545
MHGR+KV+TS +++ A Q + KR+ LD+ +LELT +L +NP
Sbjct: 1 MHGRLKVKTSEVQAEAKRLEREQKLKLYQSATQAVFQKRQAGELDESVLELTSQILGANP 60
Query: 546 DIYTLWNIRREILQLFKKSNDNIEEMSQVYNAELHLTEYCLKINPKSYCAWHQREWVLLT 725
D TLWN RRE+LQ + + + EE++ + AEL E CL++NPKSY WH R W+L
Sbjct: 61 DFATLWNCRREVLQQLE-TQKSPEELAALVKAELGFLESCLRVNPKSYGTWHHRCWLLGR 119
Query: 726 RDDPDWQKELELCNTYLKLDERNFHTWDYRRFVVSQ 833
+P+W +ELELC +L++DERNFH WDYRRFV +Q
Sbjct: 120 LPEPNWTRELELCARFLEVDERNFHCWDYRRFVATQ 155
>BC003093-1|AAH03093.1| 567|Homo sapiens Rab
geranylgeranyltransferase, alpha subunit protein.
Length = 567
Score = 155 bits (376), Expect = 2e-37
Identities = 71/156 (45%), Positives = 99/156 (63%)
Frame = +3
Query: 366 MHGRVKVRTSXXXXXXXXXXXXXXXXIFKHAMQKIQIKRKECTLDKELLELTGNVLSSNP 545
MHGR+KV+TS +++ A Q + KR+ LD+ +LELT +L +NP
Sbjct: 1 MHGRLKVKTSEEQAEAKRLEREQKLKLYQSATQAVFQKRQAGELDESVLELTSQILGANP 60
Query: 546 DIYTLWNIRREILQLFKKSNDNIEEMSQVYNAELHLTEYCLKINPKSYCAWHQREWVLLT 725
D TLWN RRE+LQ + + + EE++ + AEL E CL++NPKSY WH R W+L
Sbjct: 61 DFATLWNCRREVLQQLE-TQKSPEELAALVKAELGFLESCLRVNPKSYGTWHHRCWLLGR 119
Query: 726 RDDPDWQKELELCNTYLKLDERNFHTWDYRRFVVSQ 833
+P+W +ELELC +L++DERNFH WDYRRFV +Q
Sbjct: 120 LPEPNWTRELELCARFLEVDERNFHCWDYRRFVATQ 155
>L10413-1|AAA86285.1| 379|Homo sapiens farnesyl-protein transferase
alpha-subunit protein.
Length = 379
Score = 54.4 bits (125), Expect = 5e-07
Identities = 32/107 (29%), Positives = 55/107 (51%)
Frame = +3
Query: 513 ELTGNVLSSNPDIYTLWNIRREILQLFKKSNDNIEEMSQVYNAELHLTEYCLKINPKSYC 692
+LT + + N YT+W+ RR +L+ +K D EEM+ + ++ PK+Y
Sbjct: 118 KLTRDAIELNAANYTVWHFRRVLLKSLQK--DLHEEMNYI--------TAIIEEQPKNYQ 167
Query: 693 AWHQREWVLLTRDDPDWQKELELCNTYLKLDERNFHTWDYRRFVVSQ 833
WH R ++ DP +ELE L D +N+H W +R++V+ +
Sbjct: 168 VWHHRRVLVEWLRDPS--QELEFIADILNQDAKNYHAWQHRQWVIQE 212
Score = 54.4 bits (125), Expect = 5e-07
Identities = 31/123 (25%), Positives = 62/123 (50%)
Frame = +3
Query: 462 QKIQIKRKECTLDKELLELTGNVLSSNPDIYTLWNIRREILQLFKKSNDNIEEMSQVYNA 641
+++ +K + L +E+ +T ++ P Y +W+ RR +++ + + +E ++ + N
Sbjct: 137 RRVLLKSLQKDLHEEMNYITA-IIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQ 195
Query: 642 ELHLTEYCLKINPKSYCAWHQREWVLLTRDDPDWQKELELCNTYLKLDERNFHTWDYRRF 821
+ K+Y AW R+WV+ ++ W EL+ + LK D RN W+ R F
Sbjct: 196 DA-----------KNYHAWQHRQWVI--QEFKLWDNELQYVDQLLKEDVRNNSVWNQRYF 242
Query: 822 VVS 830
V+S
Sbjct: 243 VIS 245
>L00634-1|AAA35853.1| 379|Homo sapiens farnesyl-protein transferase
alpha-subunit protein.
Length = 379
Score = 54.4 bits (125), Expect = 5e-07
Identities = 32/107 (29%), Positives = 55/107 (51%)
Frame = +3
Query: 513 ELTGNVLSSNPDIYTLWNIRREILQLFKKSNDNIEEMSQVYNAELHLTEYCLKINPKSYC 692
+LT + + N YT+W+ RR +L+ +K D EEM+ + ++ PK+Y
Sbjct: 118 KLTRDAIELNAANYTVWHFRRVLLKSLQK--DLHEEMNYI--------TAIIEEQPKNYQ 167
Query: 693 AWHQREWVLLTRDDPDWQKELELCNTYLKLDERNFHTWDYRRFVVSQ 833
WH R ++ DP +ELE L D +N+H W +R++V+ +
Sbjct: 168 VWHHRRVLVEWLRDPS--QELEFIADILNQDAKNYHAWQHRQWVIQE 212
Score = 54.4 bits (125), Expect = 5e-07
Identities = 31/123 (25%), Positives = 62/123 (50%)
Frame = +3
Query: 462 QKIQIKRKECTLDKELLELTGNVLSSNPDIYTLWNIRREILQLFKKSNDNIEEMSQVYNA 641
+++ +K + L +E+ +T ++ P Y +W+ RR +++ + + +E ++ + N
Sbjct: 137 RRVLLKSLQKDLHEEMNYITA-IIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQ 195
Query: 642 ELHLTEYCLKINPKSYCAWHQREWVLLTRDDPDWQKELELCNTYLKLDERNFHTWDYRRF 821
+ K+Y AW R+WV+ ++ W EL+ + LK D RN W+ R F
Sbjct: 196 DA-----------KNYHAWQHRQWVI--QEFKLWDNELQYVDQLLKEDVRNNSVWNQRYF 242
Query: 822 VVS 830
V+S
Sbjct: 243 VIS 245
>BT009854-1|AAP88856.1| 379|Homo sapiens farnesyltransferase, CAAX
box, alpha protein.
Length = 379
Score = 54.4 bits (125), Expect = 5e-07
Identities = 32/107 (29%), Positives = 55/107 (51%)
Frame = +3
Query: 513 ELTGNVLSSNPDIYTLWNIRREILQLFKKSNDNIEEMSQVYNAELHLTEYCLKINPKSYC 692
+LT + + N YT+W+ RR +L+ +K D EEM+ + ++ PK+Y
Sbjct: 118 KLTRDAIELNAANYTVWHFRRVLLKSLQK--DLHEEMNYI--------TAIIEEQPKNYQ 167
Query: 693 AWHQREWVLLTRDDPDWQKELELCNTYLKLDERNFHTWDYRRFVVSQ 833
WH R ++ DP +ELE L D +N+H W +R++V+ +
Sbjct: 168 VWHHRRVLVEWLRDPS--QELEFIADILNQDAKNYHAWQHRQWVIQE 212
Score = 54.4 bits (125), Expect = 5e-07
Identities = 31/123 (25%), Positives = 62/123 (50%)
Frame = +3
Query: 462 QKIQIKRKECTLDKELLELTGNVLSSNPDIYTLWNIRREILQLFKKSNDNIEEMSQVYNA 641
+++ +K + L +E+ +T ++ P Y +W+ RR +++ + + +E ++ + N
Sbjct: 137 RRVLLKSLQKDLHEEMNYITA-IIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQ 195
Query: 642 ELHLTEYCLKINPKSYCAWHQREWVLLTRDDPDWQKELELCNTYLKLDERNFHTWDYRRF 821
+ K+Y AW R+WV+ ++ W EL+ + LK D RN W+ R F
Sbjct: 196 DA-----------KNYHAWQHRQWVI--QEFKLWDNELQYVDQLLKEDVRNNSVWNQRYF 242
Query: 822 VVS 830
V+S
Sbjct: 243 VIS 245
>BC084566-1|AAH84566.1| 379|Homo sapiens farnesyltransferase, CAAX
box, alpha protein.
Length = 379
Score = 54.4 bits (125), Expect = 5e-07
Identities = 32/107 (29%), Positives = 55/107 (51%)
Frame = +3
Query: 513 ELTGNVLSSNPDIYTLWNIRREILQLFKKSNDNIEEMSQVYNAELHLTEYCLKINPKSYC 692
+LT + + N YT+W+ RR +L+ +K D EEM+ + ++ PK+Y
Sbjct: 118 KLTRDAIELNAANYTVWHFRRVLLKSLQK--DLHEEMNYI--------TAIIEEQPKNYQ 167
Query: 693 AWHQREWVLLTRDDPDWQKELELCNTYLKLDERNFHTWDYRRFVVSQ 833
WH R ++ DP +ELE L D +N+H W +R++V+ +
Sbjct: 168 VWHHRRVLVEWLRDPS--QELEFIADILNQDAKNYHAWQHRQWVIQE 212
Score = 54.4 bits (125), Expect = 5e-07
Identities = 31/123 (25%), Positives = 62/123 (50%)
Frame = +3
Query: 462 QKIQIKRKECTLDKELLELTGNVLSSNPDIYTLWNIRREILQLFKKSNDNIEEMSQVYNA 641
+++ +K + L +E+ +T ++ P Y +W+ RR +++ + + +E ++ + N
Sbjct: 137 RRVLLKSLQKDLHEEMNYITA-IIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQ 195
Query: 642 ELHLTEYCLKINPKSYCAWHQREWVLLTRDDPDWQKELELCNTYLKLDERNFHTWDYRRF 821
+ K+Y AW R+WV+ ++ W EL+ + LK D RN W+ R F
Sbjct: 196 DA-----------KNYHAWQHRQWVI--QEFKLWDNELQYVDQLLKEDVRNNSVWNQRYF 242
Query: 822 VVS 830
V+S
Sbjct: 243 VIS 245
>BC037295-1|AAH37295.1| 214|Homo sapiens FNTA protein protein.
Length = 214
Score = 54.4 bits (125), Expect = 5e-07
Identities = 32/107 (29%), Positives = 55/107 (51%)
Frame = +3
Query: 513 ELTGNVLSSNPDIYTLWNIRREILQLFKKSNDNIEEMSQVYNAELHLTEYCLKINPKSYC 692
+LT + + N YT+W+ RR +L+ +K D EEM+ + ++ PK+Y
Sbjct: 27 KLTRDAIELNAANYTVWHFRRVLLKSLQK--DLHEEMNYI--------TAIIEEQPKNYQ 76
Query: 693 AWHQREWVLLTRDDPDWQKELELCNTYLKLDERNFHTWDYRRFVVSQ 833
WH R ++ DP +ELE L D +N+H W +R++V+ +
Sbjct: 77 VWHHRRVLVEWLRDPS--QELEFIADILNQDAKNYHAWQHRQWVIQE 121
Score = 54.4 bits (125), Expect = 5e-07
Identities = 31/123 (25%), Positives = 62/123 (50%)
Frame = +3
Query: 462 QKIQIKRKECTLDKELLELTGNVLSSNPDIYTLWNIRREILQLFKKSNDNIEEMSQVYNA 641
+++ +K + L +E+ +T ++ P Y +W+ RR +++ + + +E ++ + N
Sbjct: 46 RRVLLKSLQKDLHEEMNYITA-IIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQ 104
Query: 642 ELHLTEYCLKINPKSYCAWHQREWVLLTRDDPDWQKELELCNTYLKLDERNFHTWDYRRF 821
+ K+Y AW R+WV+ ++ W EL+ + LK D RN W+ R F
Sbjct: 105 DA-----------KNYHAWQHRQWVI--QEFKLWDNELQYVDQLLKEDVRNNSVWNQRYF 151
Query: 822 VVS 830
V+S
Sbjct: 152 VIS 154
>BC017029-1|AAH17029.2| 376|Homo sapiens FNTA protein protein.
Length = 376
Score = 54.4 bits (125), Expect = 5e-07
Identities = 32/107 (29%), Positives = 55/107 (51%)
Frame = +3
Query: 513 ELTGNVLSSNPDIYTLWNIRREILQLFKKSNDNIEEMSQVYNAELHLTEYCLKINPKSYC 692
+LT + + N YT+W+ RR +L+ +K D EEM+ + ++ PK+Y
Sbjct: 115 KLTRDAIELNAANYTVWHFRRVLLKSLQK--DLHEEMNYI--------TAIIEEQPKNYQ 164
Query: 693 AWHQREWVLLTRDDPDWQKELELCNTYLKLDERNFHTWDYRRFVVSQ 833
WH R ++ DP +ELE L D +N+H W +R++V+ +
Sbjct: 165 VWHHRRVLVEWLRDPS--QELEFIADILNQDAKNYHAWQHRQWVIQE 209
Score = 54.4 bits (125), Expect = 5e-07
Identities = 31/123 (25%), Positives = 62/123 (50%)
Frame = +3
Query: 462 QKIQIKRKECTLDKELLELTGNVLSSNPDIYTLWNIRREILQLFKKSNDNIEEMSQVYNA 641
+++ +K + L +E+ +T ++ P Y +W+ RR +++ + + +E ++ + N
Sbjct: 134 RRVLLKSLQKDLHEEMNYITA-IIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQ 192
Query: 642 ELHLTEYCLKINPKSYCAWHQREWVLLTRDDPDWQKELELCNTYLKLDERNFHTWDYRRF 821
+ K+Y AW R+WV+ ++ W EL+ + LK D RN W+ R F
Sbjct: 193 DA-----------KNYHAWQHRQWVI--QEFKLWDNELQYVDQLLKEDVRNNSVWNQRYF 239
Query: 822 VVS 830
V+S
Sbjct: 240 VIS 242
>BC053622-1|AAH53622.1| 403|Homo sapiens PTAR1 protein protein.
Length = 403
Score = 42.7 bits (96), Expect = 0.002
Identities = 25/80 (31%), Positives = 42/80 (52%)
Frame = +3
Query: 480 RKECTLDKELLELTGNVLSSNPDIYTLWNIRREILQLFKKSNDNIEEMSQVYNAELHLTE 659
RK+ EL+++T +L NPD T WN+R+E++ + + + ++ +L LT+
Sbjct: 79 RKQWLNRDELIDVTCTLLLLNPDFTTAWNVRKELI-----LSGTLNPIKDLHLGKLALTK 133
Query: 660 YCLKINPKSYCAWHQREWVL 719
+ PKS W R WVL
Sbjct: 134 F-----PKSPETWIHRRWVL 148
>AL162412-2|CAI10945.2| 312|Homo sapiens protein prenyltransferase
alpha subunit repeat containing 1 protein.
Length = 312
Score = 42.7 bits (96), Expect = 0.002
Identities = 25/80 (31%), Positives = 42/80 (52%)
Frame = +3
Query: 480 RKECTLDKELLELTGNVLSSNPDIYTLWNIRREILQLFKKSNDNIEEMSQVYNAELHLTE 659
RK+ EL+++T +L NPD T WN+R+E++ + + + ++ +L LT+
Sbjct: 78 RKQWLNRDELIDVTCTLLLLNPDFTTAWNVRKELI-----LSGTLNPIKDLHLGKLALTK 132
Query: 660 YCLKINPKSYCAWHQREWVL 719
+ PKS W R WVL
Sbjct: 133 F-----PKSPETWIHRRWVL 147
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,232,143
Number of Sequences: 237096
Number of extensions: 2177588
Number of successful extensions: 7361
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 7242
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7332
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10761200974
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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