Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_F_N09
(848 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF100664-1|AAC68985.1| 580|Caenorhabditis elegans Hypothetical ... 118 7e-27
AF038615-3|AAB94144.1| 328|Caenorhabditis elegans Hypothetical ... 54 2e-07
Z77662-5|CAB01192.2| 579|Caenorhabditis elegans Hypothetical pr... 28 7.3
AY204202-1|AAO39203.1| 339|Caenorhabditis elegans nuclear recep... 28 9.6
AY204201-1|AAO39202.1| 409|Caenorhabditis elegans nuclear recep... 28 9.6
AY204200-1|AAO39201.1| 304|Caenorhabditis elegans nuclear recep... 28 9.6
AF408754-1|AAO27833.1| 418|Caenorhabditis elegans nuclear recep... 28 9.6
AC084155-11|AAQ91893.1| 304|Caenorhabditis elegans Nuclear horm... 28 9.6
AC084155-10|AAG23368.3| 418|Caenorhabditis elegans Nuclear horm... 28 9.6
>AF100664-1|AAC68985.1| 580|Caenorhabditis elegans Hypothetical
protein M57.2 protein.
Length = 580
Score = 118 bits (283), Expect = 7e-27
Identities = 60/141 (42%), Positives = 83/141 (58%), Gaps = 15/141 (10%)
Frame = +3
Query: 447 FKHAMQKIQIKRKECTLDKELLELTGNVLSSNPDIYTLWNIRREILQLFKKSNDNIEEMS 626
F H KI KR++ D E+L LT +L N DIYT WNIRR ++L ++N+ +++ +
Sbjct: 28 FLHVRDKIVAKREKGEYDDEILSLTQAILEKNADIYTFWNIRRTTIELRMEANEKVQQSA 87
Query: 627 ------------QVYN---AELHLTEYCLKINPKSYCAWHQREWVLLTRDDPDWQKELEL 761
++ N EL L+ C+K NPKSY AW+QR W L + PD++KEL L
Sbjct: 88 DAEEEEKTKSSQKIENLLAGELFLSYECIKSNPKSYSAWYQRAWALQRQSAPDFKKELAL 147
Query: 762 CNTYLKLDERNFHTWDYRRFV 824
C L+LD RNFH WD+RR V
Sbjct: 148 CEKALQLDCRNFHCWDHRRIV 168
Score = 33.9 bits (74), Expect = 0.15
Identities = 26/102 (25%), Positives = 43/102 (42%)
Frame = +3
Query: 510 LELTGNVLSSNPDIYTLWNIRREILQLFKKSNDNIEEMSQVYNAELHLTEYCLKINPKSY 689
L L+ + SNP Y+ W R LQ + + + EL L E L+++ +++
Sbjct: 109 LFLSYECIKSNPKSYSAWYQRAWALQ---------RQSAPDFKKELALCEKALQLDCRNF 159
Query: 690 CAWHQREWVLLTRDDPDWQKELELCNTYLKLDERNFHTWDYR 815
W R V + +ELE N + + N+ W YR
Sbjct: 160 HCWDHRRIVARMAKRSE-AEELEFSNKLINDNFSNYSAWHYR 200
>AF038615-3|AAB94144.1| 328|Caenorhabditis elegans Hypothetical
protein R02D3.5 protein.
Length = 328
Score = 53.6 bits (123), Expect = 2e-07
Identities = 35/112 (31%), Positives = 57/112 (50%)
Frame = +3
Query: 495 LDKELLELTGNVLSSNPDIYTLWNIRREILQLFKKSNDNIEEMSQVYNAELHLTEYCLKI 674
L KE+ L+ +++ +P Y +W+ RR I++ +S N ELH ++
Sbjct: 94 LKKEMRYLS-DIIQESPKNYQVWHHRRFIVETIGES---------AVNDELHFCSEVIRD 143
Query: 675 NPKSYCAWHQREWVLLTRDDPDWQKELELCNTYLKLDERNFHTWDYRRFVVS 830
K+Y AW R+WV+ T P +KEL L LD RN ++YR F+++
Sbjct: 144 ENKNYHAWQHRQWVVRTFKVP-LEKELTFALHMLLLDNRNNSAYNYRYFLMT 194
Score = 52.8 bits (121), Expect = 3e-07
Identities = 27/107 (25%), Positives = 51/107 (47%)
Frame = +3
Query: 507 LLELTGNVLSSNPDIYTLWNIRREILQLFKKSNDNIEEMSQVYNAELHLTEYCLKINPKS 686
++ L + + NP YT+W RR L E+ E+ ++ +PK+
Sbjct: 62 VMALLEDCIRLNPANYTVWQYRRVCLT----------ELGWDLKKEMRYLSDIIQESPKN 111
Query: 687 YCAWHQREWVLLTRDDPDWQKELELCNTYLKLDERNFHTWDYRRFVV 827
Y WH R +++ T + EL C+ ++ + +N+H W +R++VV
Sbjct: 112 YQVWHHRRFIVETIGESAVNDELHFCSEVIRDENKNYHAWQHRQWVV 158
>Z77662-5|CAB01192.2| 579|Caenorhabditis elegans Hypothetical
protein F47B8.5 protein.
Length = 579
Score = 28.3 bits (60), Expect = 7.3
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -3
Query: 522 LSVPVILYQECILFS*FEFFAWHV*KSSIFHF 427
L+ P I+++ LFS F FF + +S FHF
Sbjct: 303 LTKPAIIFEAICLFSLFSFFNFITFSTSHFHF 334
>AY204202-1|AAO39203.1| 339|Caenorhabditis elegans nuclear receptor
NHR-114 protein.
Length = 339
Score = 27.9 bits (59), Expect = 9.6
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +3
Query: 672 INPKSYCAWHQREWVLLT 725
+N Y WH+R+W LLT
Sbjct: 208 VNHDDYHYWHERDWFLLT 225
>AY204201-1|AAO39202.1| 409|Caenorhabditis elegans nuclear receptor
NHR-114 protein.
Length = 409
Score = 27.9 bits (59), Expect = 9.6
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +3
Query: 672 INPKSYCAWHQREWVLLT 725
+N Y WH+R+W LLT
Sbjct: 199 VNHDDYHYWHERDWFLLT 216
>AY204200-1|AAO39201.1| 304|Caenorhabditis elegans nuclear receptor
NHR-114 protein.
Length = 304
Score = 27.9 bits (59), Expect = 9.6
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +3
Query: 672 INPKSYCAWHQREWVLLT 725
+N Y WH+R+W LLT
Sbjct: 208 VNHDDYHYWHERDWFLLT 225
>AF408754-1|AAO27833.1| 418|Caenorhabditis elegans nuclear receptor
protein protein.
Length = 418
Score = 27.9 bits (59), Expect = 9.6
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +3
Query: 672 INPKSYCAWHQREWVLLT 725
+N Y WH+R+W LLT
Sbjct: 208 VNHDDYHYWHERDWFLLT 225
>AC084155-11|AAQ91893.1| 304|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 114, isoform b protein.
Length = 304
Score = 27.9 bits (59), Expect = 9.6
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +3
Query: 672 INPKSYCAWHQREWVLLT 725
+N Y WH+R+W LLT
Sbjct: 208 VNHDDYHYWHERDWFLLT 225
>AC084155-10|AAG23368.3| 418|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 114, isoform a protein.
Length = 418
Score = 27.9 bits (59), Expect = 9.6
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +3
Query: 672 INPKSYCAWHQREWVLLT 725
+N Y WH+R+W LLT
Sbjct: 208 VNHDDYHYWHERDWFLLT 225
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,349,155
Number of Sequences: 27780
Number of extensions: 370327
Number of successful extensions: 857
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 825
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 853
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2108493618
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -