Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_N07
         (821 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    24   1.3  
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    23   2.9  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    22   6.8  
AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment h...    21   8.9  
AM292360-1|CAL23172.2|  427|Tribolium castaneum gustatory recept...    21   8.9  
AM292331-1|CAL23143.2|  437|Tribolium castaneum gustatory recept...    21   8.9  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = -2

Query: 805  GPLLAVSYSPSXMLV--GFPI*RTAPAIQWPAVRTY 704
            G LL+ + SPS  ++  G+ +   A  + W AV TY
Sbjct: 1555 GYLLSAAVSPSKTVIDAGYDVPVLAQNLDWVAVMTY 1590



 Score = 22.6 bits (46), Expect = 3.9
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = -1

Query: 764 GRFSDLKDCSGYTVASCKNISTAYQRATTQ*FDPV 660
           G FSD K+C+ Y V     +S     A    FDP+
Sbjct: 564 GIFSDPKNCAAYYVCR-SGLSYHLSCAENMMFDPM 597



 Score = 22.2 bits (45), Expect = 5.1
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -2

Query: 793  AVSYSPSXMLVGFPI*RTAPAIQWPAVRTY 704
            AVS S + M  G+ +   +  + W AV TY
Sbjct: 2484 AVSPSKAVMDAGYDVPALSQYLDWIAVMTY 2513


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = -1

Query: 203 LAFVDIHTRSLTATGGRAR*LSVCDVQ 123
           L F   H + L ATG  AR L + DVQ
Sbjct: 453 LDFKTGHRKVLVATGVAARGLDIKDVQ 479


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +1

Query: 250 WKLSRNLSAGFREGSHWYAVQVNVTHRMVNQEN 348
           W+L+RNL+   R+   W+        RM N++N
Sbjct: 274 WELARNLNLTERQVKIWFQ-----NRRMKNKKN 301


>AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment
           homeodomain protein protein.
          Length = 232

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +3

Query: 288 GKPLVCCPSECHTPDGKP 341
           G P+V C    H P+ KP
Sbjct: 101 GPPIVRCALRKHKPNRKP 118


>AM292360-1|CAL23172.2|  427|Tribolium castaneum gustatory receptor
           candidate 39 protein.
          Length = 427

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +3

Query: 84  CLRLLFTTIAAAY 122
           CL +L TTI A+Y
Sbjct: 285 CLLILLTTIVASY 297


>AM292331-1|CAL23143.2|  437|Tribolium castaneum gustatory receptor
           candidate 10 protein.
          Length = 437

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +3

Query: 84  CLRLLFTTIAAAY 122
           CL +L TTI A+Y
Sbjct: 285 CLLILLTTIVASY 297


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 210,543
Number of Sequences: 336
Number of extensions: 5059
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 22517873
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)