Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_N07
         (821 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein...    27   2.4  
SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr 1|||...    27   4.3  
SPAC17A2.05 |||fumerate reductase|Schizosaccharomyces pombe|chr ...    27   4.3  
SPBP4H10.04 |ppb1||calcineurin catalytic subunit Ppb1|Schizosacc...    26   5.6  
SPBC409.14c |mrps17||mitochondrial ribosomal protein subunit S17...    26   7.4  
SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin Nup132|Schizosa...    25   9.8  

>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +3

Query: 516 RATVSALLPNPADSCCGLDANVGNKIVGGTATAIDQYPWLIV 641
           R T+S LL + A  C G++ NV +     T+  I+   W +V
Sbjct: 3   RLTISGLLISLAKLCAGMEINVPSSSDVWTSGHIEPLEWSVV 44


>SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 709

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = +3

Query: 135 NGQSACTASSGGQGTCVDIYKCEPLLALVRKPDRTQQDLE 254
           N +  CT S GG      +      LAL  +PD + +D++
Sbjct: 358 NPEGTCTRSHGGTSAAAPLASAVYALALSIRPDLSWRDIQ 397


>SPAC17A2.05 |||fumerate reductase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 513

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -3

Query: 450 LHFYTWSFVRITCFPSRSEASTF 382
           L  YTW+F R+   PS + AS F
Sbjct: 4   LTIYTWTFRRLPFIPSTNSASFF 26


>SPBP4H10.04 |ppb1||calcineurin catalytic subunit
           Ppb1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 554

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 18/65 (27%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
 Frame = -1

Query: 458 VLICTFTPGVLY-V*HVFLRGRRPQHLSEVFARVYVYTFSWFTIRCVTFTWTAYQWLPSL 282
           V +C    G  Y +  +F  G  P +   +F   YV    +F+I C+ + W    W P  
Sbjct: 114 VTVCGDIHGQYYDLMKLFEVGGNPANTQYLFLGDYVDR-GYFSIECLLYLWALKIWYPKT 172

Query: 281 KPALR 267
              LR
Sbjct: 173 LWLLR 177


>SPBC409.14c |mrps17||mitochondrial ribosomal protein subunit
           S17|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 90

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = -1

Query: 701 TAYQRATTQ*FDPVITDILDDYQPRVLVDSSRCSTNDFVS 582
           TA  R   + F PV+   +  YQ  ++ D   C+  D V+
Sbjct: 17  TAKVRVAKEKFHPVVKKYVTQYQNYMVQDDLNCNVGDAVT 56


>SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin
           Nup132|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1162

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = -2

Query: 619 SIAVAVPPTILFPTLASRPQQESAGL-GSNAET 524
           S+  A PPTI FP     P+++S G  G NA T
Sbjct: 92  SLGTAEPPTITFPL----PEEDSNGFSGQNALT 120


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,591,272
Number of Sequences: 5004
Number of extensions: 78592
Number of successful extensions: 187
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 402440190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)