Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_N06
         (592 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC320.12 ||SPCC330.17c|mitochondrial inner membrane peptidase ...    35   0.008
SPBC29A3.21 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    27   1.5  
SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyce...    27   2.0  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   6.2  
SPBC365.12c |ish1||LEA domain protein|Schizosaccharomyces pombe|...    25   8.3  

>SPCC320.12 ||SPCC330.17c|mitochondrial inner membrane peptidase
           Atp23|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 185

 Score = 35.1 bits (77), Expect = 0.008
 Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = +2

Query: 137 KKAHEDCVKTKALYSVLAVRQI-DKLEAVDIIEKVFPKCYQDLEP 268
           +K H++CVK +A  SV        K +A  I+E+VF  C+ D  P
Sbjct: 136 RKHHQECVKRRATISVQGNPNCKSKEQAEAIVEEVFNSCFNDFRP 180



 Score = 30.7 bits (66), Expect = 0.17
 Identities = 11/23 (47%), Positives = 19/23 (82%)
 Frame = +1

Query: 13  RNELDFKNMEHLACTEIRAANLT 81
           R E+D+ N+ H AC+EIRA++++
Sbjct: 96  RFEVDWNNLRHQACSEIRASSMS 118


>SPBC29A3.21 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 100

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
 Frame = -1

Query: 364 RYTHLLIIITIVFGFSESSEHVI---GIPSY 281
           RY H ++  T+VF F+E S H++   G+ SY
Sbjct: 7   RYLHNVLSHTVVFCFTEVSLHIVKQLGVESY 37


>SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1210

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = -1

Query: 370 ILRYTHLLIIITIVFGFSESS-EHVIGIPSYPPADRLQVLV 251
           ILRY HLL ++    GF++++ +H+I      P  +    V
Sbjct: 370 ILRYAHLLTVVYSCKGFNDNALDHIIAQAPIRPVKKATTYV 410


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 15/49 (30%), Positives = 22/49 (44%)
 Frame = -2

Query: 330  YLASLKARNMSSEFLRILLPIGSKSW*HLGNTFSIMSTASNLSICRTAN 184
            ++  L +   S  F R    +GS+ W  L NT+ I+     LS C   N
Sbjct: 2296 FIKGLNSSFPSDLFSRFQFLLGSQHWESLSNTYWIVQLNIFLSRCFDLN 2344


>SPBC365.12c |ish1||LEA domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 684

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -1

Query: 295 GIPSYPPADRLQVLVALRKYFFDNVHGFQ 209
           GIP+Y P+   Q    LR+ ++   +G+Q
Sbjct: 313 GIPAYQPSPIDQFYAHLRRQYYLKTNGYQ 341


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,992,131
Number of Sequences: 5004
Number of extensions: 35010
Number of successful extensions: 78
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)