Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_N06
         (592 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0278 - 24106072-24106254,24106854-24106898,24106985-241070...    29   3.7  
02_02_0240 + 8196140-8198248,8198381-8198650                           28   4.8  
02_04_0525 - 23672984-23673085,23673315-23673419,23673820-236739...    28   6.4  

>04_04_0278 -
           24106072-24106254,24106854-24106898,24106985-24107068,
           24107191-24107389,24108281-24108432
          Length = 220

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 11/21 (52%), Positives = 17/21 (80%)
 Frame = +1

Query: 19  ELDFKNMEHLACTEIRAANLT 81
           ++D+KN  H AC+EIRA +L+
Sbjct: 104 DMDWKNCAHHACSEIRANHLS 124


>02_02_0240 + 8196140-8198248,8198381-8198650
          Length = 792

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 11/43 (25%), Positives = 21/43 (48%)
 Frame = +3

Query: 237 YFLSATKTWSRSAGGYEGIPMTCSELSEKPNTMVMMISKCVYR 365
           +F   T T+SR     EG+P    +L +    +  ++ +C+ R
Sbjct: 229 FFTKLTDTYSRVLNPVEGMPALLKDLQDGAKDLTTVLERCLNR 271


>02_04_0525 -
           23672984-23673085,23673315-23673419,23673820-23673979,
           23674085-23674162,23674383-23674524,23674641-23674785,
           23674888-23674950,23675042-23675101,23675364-23675441,
           23675524-23675598,23675744-23675860,23675960-23676190,
           23676300-23676419,23676512-23676588,23676669-23676769,
           23676844-23676950,23677094-23677251,23677383-23677599
          Length = 711

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 25/99 (25%), Positives = 45/99 (45%), Gaps = 3/99 (3%)
 Frame = +2

Query: 50  LVQRSGQLISLIAPLR---VLGLRXDASWTKIKKAHEDCVKTKALYSVLAVRQIDKLEAV 220
           LVQ++   I L+A +     + LR    + KI+    +    +A +  L   + D  + +
Sbjct: 157 LVQKNYN-IPLVADIHFAPTVALRVAECFDKIRVNPGNFADRRAQFEQLEYTEDDYQKEL 215

Query: 221 DIIEKVFPKCYQDLEPIGRRIRRNSDDMFRAFREAKYYG 337
           + IEKVF    +  +  GR +R  ++    + R   YYG
Sbjct: 216 EHIEKVFSPLVEKCKQYGRAMRIGTNHGSLSDRIMSYYG 254


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,327,330
Number of Sequences: 37544
Number of extensions: 213490
Number of successful extensions: 462
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 460
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 462
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1400060088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)