Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_N06
         (592 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC115382-1|AAI15383.1|  246|Homo sapiens XRCC6 binding protein 1...    50   6e-06
BC115381-1|AAI15382.1|  246|Homo sapiens XRCC6 binding protein 1...    50   6e-06
BC012776-1|AAH12776.3|  246|Homo sapiens XRCC6 binding protein 1...    50   6e-06
AF078164-1|AAD31085.1|  288|Homo sapiens Ku70-binding protein pr...    50   6e-06

>BC115382-1|AAI15383.1|  246|Homo sapiens XRCC6 binding protein 1
           protein.
          Length = 246

 Score = 50.0 bits (114), Expect = 6e-06
 Identities = 21/48 (43%), Positives = 31/48 (64%)
 Frame = +2

Query: 134 IKKAHEDCVKTKALYSVLAVRQIDKLEAVDIIEKVFPKCYQDLEPIGR 277
           +K+ H+ CV+ +A  S+LAVR I K  A   +++VF  C+ D EP GR
Sbjct: 174 LKQHHQTCVRDRATLSILAVRNISKEVAKKAVDEVFESCFNDHEPFGR 221



 Score = 33.1 bits (72), Expect = 0.76
 Identities = 14/25 (56%), Positives = 19/25 (76%), Gaps = 1/25 (4%)
 Frame = +1

Query: 28  FKNMEHLACTEIRAANLT-HCSFAS 99
           F N+ HLAC+E+RAANL+  CS  +
Sbjct: 141 FTNIRHLACSEVRAANLSGDCSLVN 165


>BC115381-1|AAI15382.1|  246|Homo sapiens XRCC6 binding protein 1
           protein.
          Length = 246

 Score = 50.0 bits (114), Expect = 6e-06
 Identities = 21/48 (43%), Positives = 31/48 (64%)
 Frame = +2

Query: 134 IKKAHEDCVKTKALYSVLAVRQIDKLEAVDIIEKVFPKCYQDLEPIGR 277
           +K+ H+ CV+ +A  S+LAVR I K  A   +++VF  C+ D EP GR
Sbjct: 174 LKQHHQTCVRDRATLSILAVRNISKEVAKKAVDEVFESCFNDHEPFGR 221



 Score = 33.1 bits (72), Expect = 0.76
 Identities = 14/25 (56%), Positives = 19/25 (76%), Gaps = 1/25 (4%)
 Frame = +1

Query: 28  FKNMEHLACTEIRAANLT-HCSFAS 99
           F N+ HLAC+E+RAANL+  CS  +
Sbjct: 141 FTNIRHLACSEVRAANLSGDCSLVN 165


>BC012776-1|AAH12776.3|  246|Homo sapiens XRCC6 binding protein 1
           protein.
          Length = 246

 Score = 50.0 bits (114), Expect = 6e-06
 Identities = 21/48 (43%), Positives = 31/48 (64%)
 Frame = +2

Query: 134 IKKAHEDCVKTKALYSVLAVRQIDKLEAVDIIEKVFPKCYQDLEPIGR 277
           +K+ H+ CV+ +A  S+LAVR I K  A   +++VF  C+ D EP GR
Sbjct: 174 LKQHHQTCVRDRATLSILAVRNISKEVAKKAVDEVFESCFNDHEPFGR 221



 Score = 33.1 bits (72), Expect = 0.76
 Identities = 14/25 (56%), Positives = 19/25 (76%), Gaps = 1/25 (4%)
 Frame = +1

Query: 28  FKNMEHLACTEIRAANLT-HCSFAS 99
           F N+ HLAC+E+RAANL+  CS  +
Sbjct: 141 FTNIRHLACSEVRAANLSGDCSLVN 165


>AF078164-1|AAD31085.1|  288|Homo sapiens Ku70-binding protein
           protein.
          Length = 288

 Score = 50.0 bits (114), Expect = 6e-06
 Identities = 21/48 (43%), Positives = 31/48 (64%)
 Frame = +2

Query: 134 IKKAHEDCVKTKALYSVLAVRQIDKLEAVDIIEKVFPKCYQDLEPIGR 277
           +K+ H+ CV+ +A  S+LAVR I K  A   +++VF  C+ D EP GR
Sbjct: 216 LKQHHQTCVRDRATLSILAVRNISKEVAKKAVDEVFESCFNDHEPFGR 263



 Score = 33.1 bits (72), Expect = 0.76
 Identities = 14/25 (56%), Positives = 19/25 (76%), Gaps = 1/25 (4%)
 Frame = +1

Query: 28  FKNMEHLACTEIRAANLT-HCSFAS 99
           F N+ HLAC+E+RAANL+  CS  +
Sbjct: 183 FTNIRHLACSEVRAANLSGDCSLVN 207


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 68,038,329
Number of Sequences: 237096
Number of extensions: 1137887
Number of successful extensions: 1964
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1915
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1964
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 6211568660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)