Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_N06
         (592 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding prote...    23   3.0  
AF339140-1|AAK01304.1|  120|Apis mellifera odorant binding prote...    23   3.0  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    22   3.9  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    22   5.2  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    21   6.8  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   9.0  

>AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding protein
           ASP6 protein.
          Length = 146

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +1

Query: 100 AWSQGRCIMD*DKE 141
           AW  G+CI + DKE
Sbjct: 128 AWQFGKCIYENDKE 141


>AF339140-1|AAK01304.1|  120|Apis mellifera odorant binding protein
           protein.
          Length = 120

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +1

Query: 100 AWSQGRCIMD*DKE 141
           AW  G+CI + DKE
Sbjct: 102 AWQFGKCIYENDKE 115


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +2

Query: 53  VQRSGQLISLIAPLRVLG 106
           V R G+ +S +AP +VLG
Sbjct: 149 VSRDGKYLSTLAPGKVLG 166


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -3

Query: 299 HRNSFVSSCRSAPS 258
           +RN+F  +CR +PS
Sbjct: 323 YRNAFKETCRCSPS 336


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +3

Query: 276 GGYEGIPMTCSELSE 320
           GGY G+P   S L E
Sbjct: 422 GGYNGLPTVMSGLDE 436


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 10/31 (32%), Positives = 14/31 (45%)
 Frame = +1

Query: 247 VLPRLGADRQEDTKEFR*HVPSFQRSQILWL 339
           V PR  A R ++    R HV      ++ WL
Sbjct: 406 VTPRFQAKRLKEEANIRCHVAGEPLPRVQWL 436


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 130,808
Number of Sequences: 438
Number of extensions: 2259
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17237673
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)