Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_F_N05
(825 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0180 + 15502809-15503312,15503399-15503454,15503934-155040... 121 6e-28
03_02_0926 + 12448032-12448231,12448727-12448815,12449956-124500... 106 2e-23
03_01_0359 - 2805094-2805175,2805256-2805347,2805443-2805517,280... 87 2e-17
03_02_0651 + 10183050-10184167,10184350-10184974,10185023-101852... 43 3e-04
09_04_0081 - 14400293-14400397,14400953-14401036,14401144-144012... 31 0.84
11_04_0168 + 14391244-14391325,14392132-14392155,14392256-143923... 31 1.5
06_01_0931 + 7192519-7194075 31 1.5
05_01_0192 + 1394342-1396645 30 1.9
07_03_1107 - 24024387-24024497,24025799-24026410 29 4.5
11_03_0035 - 9130678-9130887,9130963-9131255,9132328-9132604 29 5.9
11_06_0284 + 21909758-21913645 28 7.8
06_03_1403 + 29923503-29923821,29924269-29924405,29924495-299246... 28 7.8
03_05_0432 - 24231984-24233048,24233391-24235160,24235261-242365... 28 7.8
01_01_0895 + 7052118-7053110,7053249-7053252,7054450-7055189 28 7.8
>10_08_0180 +
15502809-15503312,15503399-15503454,15503934-15504053,
15504190-15504260,15504603-15504696,15504772-15504978,
15505406-15505657,15505781-15505889,15506112-15506179,
15506278-15506347,15506429-15506503,15506600-15506691,
15506779-15506860
Length = 599
Score = 121 bits (292), Expect = 6e-28
Identities = 60/137 (43%), Positives = 82/137 (59%), Gaps = 7/137 (5%)
Frame = +3
Query: 408 IHRAAGPFLQAECDSIGGCPTGDAKVTGGYNLPAKYIIHTVGPQ------DGSAEKLESC 569
+H AAG L EC ++GGC TG AK+T Y+LPA+ +IHTVGP+ + L C
Sbjct: 153 LHAAAGSGLAEECSTLGGCRTGMAKMTNAYDLPARKVIHTVGPKYAVKYHTAAENALSHC 212
Query: 570 YEKCLSFQQEYQIKSIAFPCISTGIYGFPNRLAAHIALRTARKFLE-TNTEMNRIIFCTF 746
Y CL E ++SIA CI T +P AAH+A+RT R+FLE +++ ++FCT
Sbjct: 213 YRSCLELLIENGLESIAMGCIYTEAKNYPREPAAHVAIRTVRRFLEKQKSKIAGVVFCTV 272
Query: 747 LPIDVEIYETLMQLYFP 797
D EIY+ L+ LYFP
Sbjct: 273 SSSDTEIYKRLLPLYFP 289
>03_02_0926 +
12448032-12448231,12448727-12448815,12449956-12450096,
12450181-12450283,12450386-12450481,12450580-12450654,
12450754-12450823,12451028-12451111
Length = 285
Score = 106 bits (255), Expect = 2e-23
Identities = 63/158 (39%), Positives = 90/158 (56%), Gaps = 10/158 (6%)
Frame = +3
Query: 294 SISERVSIFKGDITKLEIDAIVNAANSRLKAGGGVDGAIHRAAGPFLQAECDSI----GG 461
S S+ +S+ +T + I VNAAN R+ GGGVDGAIHR AGP L C + G
Sbjct: 108 SNSDYLSMTMKKMTVIHISQ-VNAANERMLGGGGVDGAIHRTAGPELVEACRKVPEVKSG 166
Query: 462 --CPTGDAKVTGGYNLPAKYIIHTVGP---QDGSAE-KLESCYEKCLSFQQEYQIKSIAF 623
CPTG+A++T + LP +IHTVGP D E L + Y L ++ I+ IA
Sbjct: 167 VRCPTGEARITPAFKLPVSRVIHTVGPIYDMDKQPEVSLNNAYTNSLKLAKQNGIQYIAL 226
Query: 624 PCISTGIYGFPNRLAAHIALRTARKFLETNTEMNRIIF 737
P IS G+Y +P + A+ IA+ TA++F E++ ++F
Sbjct: 227 PAISCGVYRYPPKEASKIAVSTAQRFSNDIKEVHFVLF 264
>03_01_0359 -
2805094-2805175,2805256-2805347,2805443-2805517,
2805582-2805675,2805769-2805872,2806777-2806885,
2807397-2807609,2808170-2808289,2809060-2809115,
2809210-2809287,2809374-2809733
Length = 460
Score = 86.6 bits (205), Expect = 2e-17
Identities = 42/102 (41%), Positives = 60/102 (58%), Gaps = 6/102 (5%)
Frame = +3
Query: 297 ISERVSIFKGDITKLEIDAIVNAANSRLKAGGGVDGAIHRAAGPFLQAECDSIGGCPTGD 476
I+ ++ +++G LE+DA+VN+ N L G +H AAGP L EC ++GGC TG
Sbjct: 95 INSKICLWRGHPWNLEVDAVVNSTNENLDEAHSSPG-LHAAAGPGLAEECTTLGGCRTGM 153
Query: 477 AKVTGGYNLPAKYIIHTVGPQ------DGSAEKLESCYEKCL 584
AK+T Y+LPA+ +IHTVGP+ + L CY CL
Sbjct: 154 AKMTNAYDLPARKVIHTVGPKYAVKYHTAAENALSHCYRSCL 195
>03_02_0651 +
10183050-10184167,10184350-10184974,10185023-10185208,
10185325-10185660
Length = 754
Score = 42.7 bits (96), Expect = 3e-04
Identities = 29/64 (45%), Positives = 35/64 (54%), Gaps = 7/64 (10%)
Frame = +3
Query: 267 IKINTEKNKSISERVSIFKGDITKLE------IDAIVNAANSRLK-AGGGVDGAIHRAAG 425
+K K S R F GDIT+L+ + I NAAN RLK GGGV+ AI+ AAG
Sbjct: 332 VKEKAAKKNINSSRFFTFVGDITQLQSKGGLRCNVIANAANWRLKPGGGGVNAAIYNAAG 391
Query: 426 PFLQ 437
LQ
Sbjct: 392 EDLQ 395
>09_04_0081 -
14400293-14400397,14400953-14401036,14401144-14401214,
14401293-14401380,14401487-14401678,14401772-14402704
Length = 490
Score = 31.5 bits (68), Expect = 0.84
Identities = 20/67 (29%), Positives = 26/67 (38%), Gaps = 5/67 (7%)
Frame = -3
Query: 493 PPVTLASPVGHPPIESHSACKKGPAARCMAPSTP---PPAFSLELAAFTI--ASISSLVM 329
PP P HPP H + P AP P PP + FT A++S +M
Sbjct: 227 PPSPHRHPAAHPPPPPHHPAPRPPPPMAAAPRQPAALPPVPGATVVPFTTMQAAVSRNMM 286
Query: 328 SPLKIET 308
L + T
Sbjct: 287 ESLSVPT 293
>11_04_0168 +
14391244-14391325,14392132-14392155,14392256-14392381,
14392491-14392832,14392955-14393070,14393166-14393426,
14393875-14394072,14394177-14394254
Length = 408
Score = 30.7 bits (66), Expect = 1.5
Identities = 20/70 (28%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Frame = +3
Query: 225 SKKSTTDDLKEFEKIKINTEKNKSISERVSIFKG--DITKLEIDAIVNAANSRLKAGGGV 398
SKKS D+ + + +++ NK E ++ + G +K EI+ +N ANS++ G G
Sbjct: 61 SKKSKADETIDSTR---SSQDNKVHGEVINRWSGLYKFSKGEIEKAINYANSKICLGSGS 117
Query: 399 DGAIHRAAGP 428
G +++ P
Sbjct: 118 AGQVYQGVLP 127
>06_01_0931 + 7192519-7194075
Length = 518
Score = 30.7 bits (66), Expect = 1.5
Identities = 26/81 (32%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Frame = -3
Query: 562 SSFSADPSWGPTVWMIYLAGKL*PPVTLASPVGHPPIESHS-ACKKGPAARCMAPSTPPP 386
SSF+ADP P ++ ++G L +A PV PP ++ AC + C A + PP
Sbjct: 25 SSFTADP---PAEFLCPISGTL-----MADPVVVPPGQTFERACIQA----CAALAFSPP 72
Query: 385 AFSLELAAFTIASISSLVMSP 323
A + +L++ ++ S LV+ P
Sbjct: 73 AVAADLSSLPPSASSPLVLVP 93
>05_01_0192 + 1394342-1396645
Length = 767
Score = 30.3 bits (65), Expect = 1.9
Identities = 17/45 (37%), Positives = 25/45 (55%)
Frame = -3
Query: 457 PIESHSACKKGPAARCMAPSTPPPAFSLELAAFTIASISSLVMSP 323
P S S+ K P+ R PS+PPP + AA AS++ ++ SP
Sbjct: 247 PTSSSSSPSK-PSPRMATPSSPPPEAPVSSAAPPPASLNPMLPSP 290
>07_03_1107 - 24024387-24024497,24025799-24026410
Length = 240
Score = 29.1 bits (62), Expect = 4.5
Identities = 20/62 (32%), Positives = 28/62 (45%)
Frame = -3
Query: 484 TLASPVGHPPIESHSACKKGPAARCMAPSTPPPAFSLELAAFTIASISSLVMSPLKIETR 305
T +P PP +S A P A A +TPPPA S + A + S +P I T+
Sbjct: 79 TTPAPTKAPPTKSTKAPAPAPKA---AKATPPPASSPPVEAPVASPPSPAAEAPATIPTK 135
Query: 304 SE 299
+
Sbjct: 136 PD 137
>11_03_0035 - 9130678-9130887,9130963-9131255,9132328-9132604
Length = 259
Score = 28.7 bits (61), Expect = 5.9
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = -3
Query: 460 PPIESHSACKKGPAARCMAPSTPPPAFSLELA 365
PP + HS KG AP+ PP LEL+
Sbjct: 139 PPFKKHSIFFKGLFGTAPAPAPAPPLLELELS 170
>11_06_0284 + 21909758-21913645
Length = 1295
Score = 28.3 bits (60), Expect = 7.8
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Frame = +3
Query: 174 ENVDPWSKYLNKSQGIDSKKSTTDDLK-EFEKIKINTEKNKSISE-RVSIFKGDITKL 341
E+ DPW Y+ K SKK +K + EK+KI + K S+ + KGD T L
Sbjct: 295 EDPDPWKDYVKKCGNHRSKKRMLRKIKRKIEKMKIYEKFEKIKSDIQDGQQKGDKTLL 352
>06_03_1403 +
29923503-29923821,29924269-29924405,29924495-29924647,
29924690-29925280,29925523-29925597,29925901-29926169,
29927238-29927331
Length = 545
Score = 28.3 bits (60), Expect = 7.8
Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 2/79 (2%)
Frame = +3
Query: 150 KSSDFIDLENVDPWSKYLNKSQGIDSKKSTTDDLKEFEKIKINTEKNKSISERVSIFK-- 323
K D IDLE +D +SK N+ K EKI+ + + E++ K
Sbjct: 309 KEVDHIDLEELDKFSKLQNEQNANRLKVLEIQQKLSSEKIEQTKISHLAAKEQMEAAKVQ 368
Query: 324 GDITKLEIDAIVNAANSRL 380
+ KLE++A + +RL
Sbjct: 369 REARKLEVEARMYETYNRL 387
>03_05_0432 -
24231984-24233048,24233391-24235160,24235261-24236582,
24236668-24237013
Length = 1500
Score = 28.3 bits (60), Expect = 7.8
Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Frame = +3
Query: 168 DLENVDPWSKYLNKSQGIDSKKSTTD--DLKEFEK-IKINTEKNKSISERVSIFKGDITK 338
+++N D +L+ DSKK D D + +K ++ +E+NK + R+S K
Sbjct: 91 EMDNPDMAPYFLSFINASDSKKQAKDNQDNERLQKELESLSEENKDLKSRISSLLEQTNK 150
Query: 339 LEIDAI 356
E++ +
Sbjct: 151 AELEVV 156
>01_01_0895 + 7052118-7053110,7053249-7053252,7054450-7055189
Length = 578
Score = 28.3 bits (60), Expect = 7.8
Identities = 20/80 (25%), Positives = 39/80 (48%), Gaps = 5/80 (6%)
Frame = +3
Query: 186 PWSKYLNKSQGIDSKKSTT----DDLKEFEKIKINTEKNKSISERVSIFKGDITKLE-ID 350
PW +++K G+D+K + T D L E I + E+ +S + V + D + +D
Sbjct: 242 PWLAWVDKLTGLDAKVARTSAAMDGLLE-RVIADHRERRRSRGQAVGDGEADADHRDFVD 300
Query: 351 AIVNAANSRLKAGGGVDGAI 410
+++ + + AG G G +
Sbjct: 301 VMLDVSEAEEGAGAGAGGVL 320
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,492,443
Number of Sequences: 37544
Number of extensions: 433982
Number of successful extensions: 1669
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1570
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1662
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2268190812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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