Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_N05
         (825 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    29   0.039
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    29   0.039
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        23   3.4  
DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex det...    22   6.0  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    22   7.9  

>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 29.5 bits (63), Expect = 0.039
 Identities = 16/44 (36%), Positives = 25/44 (56%)
 Frame = -3

Query: 139 LFSSNESLRILFFSISHLVELTIVATEKQRICARIYFAPKLPQV 8
           L SS++S +    SI +     +  TE+QRI  R Y AP+L ++
Sbjct: 535 LESSHDSFQAALRSIENYYSGKLERTEEQRIALRKYHAPRLAKL 578


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 29.5 bits (63), Expect = 0.039
 Identities = 16/44 (36%), Positives = 25/44 (56%)
 Frame = -3

Query: 139 LFSSNESLRILFFSISHLVELTIVATEKQRICARIYFAPKLPQV 8
           L SS++S +    SI +     +  TE+QRI  R Y AP+L ++
Sbjct: 573 LESSHDSFQAALRSIENYYSGKLERTEEQRIALRKYHAPRLAKL 616


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = -3

Query: 475 SPVGHPPIESHSACKKGPAARCMAPSTP 392
           SP G  P  S S+    PAAR  +   P
Sbjct: 63  SPTGSSPQHSGSSASTSPAARTTSSMYP 90


>DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -3

Query: 424 PAARCMAPSTPPPAF 380
           P  RC+ P TP P F
Sbjct: 146 PRFRCIGPPTPFPRF 160


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 21.8 bits (44), Expect = 7.9
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +3

Query: 747 LPIDVEIYETLMQ 785
           LPIDV++Y T  Q
Sbjct: 58  LPIDVDVYNTEQQ 70


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 224,545
Number of Sequences: 438
Number of extensions: 4623
Number of successful extensions: 19
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26338809
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)